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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 903 904 905 906 907 908 909 910 911 ... 1720 1721 » 45301-45350 / 86044 show all
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	85.2934	80.1932	91.0864	71.0950	332	82	327	32	22	68.7500
eyeh-varpipe	SNP	*	map_l125_m2_e1	homalt	99.8554	99.8175	99.8934	71.0933	17500	32	16871	18	10	55.5556
jli-custom	SNP	tv	map_l150_m1_e0	*	99.0626	98.7812	99.3456	71.0917	10779	133	10778	71	23	32.3944
gduggal-snapvard	SNP	*	map_l150_m1_e0	homalt	97.6436	95.6533	99.7185	71.0895	10783	490	10627	30	24	80.0000
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3981	99.0572	99.7414	71.0854	30471	290	30469	79	73	92.4051
rpoplin-dv42	SNP	ti	map_l150_m1_e0	homalt	99.3702	99.0583	99.6841	71.0853	7258	69	7258	23	22	95.6522
hfeng-pmm1	SNP	ti	map_l125_m1_e0	hetalt	100.0000	100.0000	100.0000	71.0843	24	0	24	0	0
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.3970	97.7723	95.0598	71.0826	29801	679	29633	1540	1434	93.1169
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.3970	97.7723	95.0598	71.0826	29801	679	29633	1540	1434	93.1169
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	33.4346	30.2162	37.4205	71.0821	643	1485	647	1082	1074	99.2606
ckim-gatk	SNP	tv	map_siren	*	92.9580	88.1058	98.3758	71.0821	40467	5463	40459	668	31	4.6407
raldana-dualsentieon	SNP	ti	map_l125_m2_e1	*	99.1254	99.1822	99.0686	71.0811	30319	250	30315	285	11	3.8597
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.2925	98.9506	97.6432	71.0801	17632	187	17235	416	367	88.2212
gduggal-snapvard	INDEL	D16_PLUS	*	het	17.6734	11.3960	39.3474	71.0797	360	2799	410	632	372	58.8608
ckim-gatk	INDEL	D6_15	HG002compoundhet	homalt	27.1186	100.0000	15.6863	71.0775	24	0	24	129	128	99.2248
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	50.3713	34.4623	93.5632	71.0771	407	774	407	28	21	75.0000
eyeh-varpipe	SNP	*	map_l125_m2_e1	hetalt	99.7481	100.0000	99.4975	71.0756	30	0	198	1	0	0.0000
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.8358	99.1988	98.4754	71.0733	16839	136	16083	249	72	28.9157
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8358	99.1988	98.4754	71.0733	16839	136	16083	249	72	28.9157
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	94.7282	99.1860	90.6540	71.0721	3899	32	3909	403	1	0.2481
gduggal-snapvard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	88.5779	97.0912	81.4371	71.0683	2470	74	2448	558	8	1.4337
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	97.0588	97.0588	97.0588	71.0638	66	2	66	2	2	100.0000
ckim-isaac	SNP	ti	map_l100_m0_e0	het	78.6364	64.9145	99.7144	71.0617	9077	4906	9078	26	3	11.5385
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	81.2017	96.8037	69.9308	71.0611	636	21	1314	565	439	77.6991
hfeng-pmm1	SNP	tv	map_l125_m2_e1	*	99.4888	99.3156	99.6626	71.0607	16543	114	16541	56	16	28.5714
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.3248	99.2165	99.4333	71.0574	16842	133	16845	96	85	88.5417
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.3248	99.2165	99.4333	71.0574	16842	133	16845	96	85	88.5417
gduggal-bwaplat	SNP	ti	map_l100_m2_e1	homalt	77.3423	63.0691	99.9657	71.0565	11664	6830	11653	4	4	100.0000
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	*	99.3257	99.4273	99.2243	71.0550	29167	168	29163	228	42	18.4211
hfeng-pmm1	INDEL	I1_5	HG002complexvar	hetalt	98.1752	96.5238	99.8841	71.0548	1666	60	1724	2	2	100.0000
hfeng-pmm2	INDEL	D6_15	HG002compoundhet	homalt	47.5248	100.0000	31.1688	71.0526	24	0	24	53	52	98.1132
astatham-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	96.6851	94.0860	99.4318	71.0526	175	11	175	1	1	100.0000
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	52.4345	36.8421	90.9091	71.0526	7	12	10	1	1	100.0000
jpowers-varprowl	INDEL	D16_PLUS	func_cds	*	86.9565	83.3333	90.9091	71.0526	10	2	10	1	1	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.2973	94.7368	100.0000	71.0526	18	1	22	0	0
rpoplin-dv42	INDEL	D16_PLUS	func_cds	*	95.6522	91.6667	100.0000	71.0526	11	1	11	0	0
gduggal-bwavard	INDEL	C1_5	HG002compoundhet	homalt	0.0000	0.0000	90.9091	71.0526	0	0	10	1	1	100.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	92.8310	87.1028	99.3658	71.0526	466	69	470	3	3	100.0000
gduggal-bwafb	SNP	tv	map_l125_m2_e1	homalt	99.4877	99.1110	99.8673	71.0512	6020	54	6020	8	6	75.0000
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	74.5086	80.7087	69.1932	71.0477	615	147	849	378	216	57.1429
cchapple-custom	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.1825	99.6937	96.7164	71.0458	651	2	648	22	21	95.4545
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	86.4388	78.8732	95.6098	71.0452	392	105	392	18	17	94.4444
ciseli-custom	SNP	ti	map_l100_m2_e0	*	86.2627	83.2663	89.4829	71.0430	40768	8193	40704	4784	1327	27.7383
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1570	98.8791	99.4364	71.0422	1235	14	1235	7	4	57.1429
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1570	98.8791	99.4364	71.0422	1235	14	1235	7	4	57.1429
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.1406	96.7672	99.5536	71.0407	449	15	446	2	0	0.0000
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.5863	99.2023	97.9779	71.0352	3731	30	3731	77	75	97.4026
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.5863	99.2023	97.9779	71.0352	3731	30	3731	77	75	97.4026
egarrison-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	93.4013	92.5651	94.2529	71.0322	249	20	246	15	2	13.3333
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8145	99.8409	99.7880	71.0316	1883	3	1883	4	2	50.0000

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