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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 902 903 904 905 906 907 908 909 910 ... 1720 1721 » 45251-45300 / 86044 show all
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	96.6851	94.0860	99.4318	71.1475	175	11	175	1	1	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.3707	95.9702	98.8127	71.1458	1548	65	1498	18	13	72.2222
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	96.3746	94.5455	98.2759	71.1443	52	3	57	1	1	100.0000
gduggal-snapvard	INDEL	C16_PLUS	HG002complexvar	het	0.0000	0.0000	37.2093	71.1409	0	0	16	27	5	18.5185
ndellapenna-hhga	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.4179	97.9487	96.8928	71.1401	30130	631	30123	966	497	51.4493
ltrigg-rtg1	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.7006	97.8372	99.5793	71.1392	47227	1044	47105	199	54	27.1357
jli-custom	SNP	*	map_l150_m1_e0	*	99.1511	98.8337	99.4706	71.1384	30252	357	30249	161	58	36.0248
gduggal-bwaplat	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	80.3149	68.8830	96.2963	71.1384	518	234	520	20	19	95.0000
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	93.9948	94.0299	93.9597	71.1380	567	36	560	36	34	94.4444
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7085	99.5633	99.8541	71.1368	1368	6	1369	2	0	0.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.1666	95.2420	97.1093	71.1366	2342	117	2318	69	36	52.1739
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.1888	99.1803	95.2756	71.1364	484	4	484	24	19	79.1667
asubramanian-gatk	SNP	ti	map_siren	het	80.0204	66.7709	99.8298	71.1364	41653	20729	41647	71	23	32.3944
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	20.5715	13.2114	46.4481	71.1356	65	427	85	98	77	78.5714
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	79.1393	65.8683	99.1071	71.1340	110	57	111	1	1	100.0000
hfeng-pmm3	SNP	*	map_l125_m2_e0	*	99.5641	99.4949	99.6335	71.1339	46487	236	46481	171	26	15.2047
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	88.1960	96.5132	81.1986	71.1330	692	25	691	160	160	100.0000
mlin-fermikit	INDEL	D1_5	HG002complexvar	hetalt	89.3834	81.7308	98.6171	71.1327	1105	247	1141	16	16	100.0000
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	77.3318	82.5652	72.7223	71.1326	13274	2803	12037	4515	1002	22.1927
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	77.3318	82.5652	72.7223	71.1326	13274	2803	12037	4515	1002	22.1927
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3654	95.1442	99.6928	71.1308	627	32	649	2	2	100.0000
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.3654	95.1442	99.6928	71.1308	627	32	649	2	2	100.0000
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	84.1642	83.2621	85.0860	71.1301	31558	6344	32017	5612	5145	91.6785
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.3594	99.1723	99.5472	71.1298	2636	22	2638	12	6	50.0000
gduggal-bwaplat	SNP	ti	map_l100_m2_e0	homalt	77.1723	62.8434	99.9652	71.1284	11506	6803	11495	4	4	100.0000
gduggal-snapvard	SNP	ti	map_l150_m1_e0	homalt	97.5731	95.5507	99.6829	71.1266	7001	326	6916	22	18	81.8182
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.4450	95.2959	99.6933	71.1249	628	31	650	2	2	100.0000
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.4450	95.2959	99.6933	71.1249	628	31	650	2	2	100.0000
bgallagher-sentieon	SNP	tv	map_l150_m2_e0	homalt	99.6442	99.4612	99.8279	71.1244	4061	22	4061	7	5	71.4286
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.7965	98.4954	99.0994	71.1241	28280	432	28279	257	56	21.7899
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.7965	98.4954	99.0994	71.1241	28280	432	28279	257	56	21.7899
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	74.7226	73.9078	75.5556	71.1230	609	215	612	198	191	96.4646
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	89.1434	91.8292	86.6102	71.1229	3248	289	20162	3117	3094	99.2621
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8987	98.8832	98.9142	71.1221	17620	199	17218	189	154	81.4815
dgrover-gatk	INDEL	I16_PLUS	*	*	97.6461	96.9265	98.3766	71.1206	6181	196	6181	102	80	78.4314
egarrison-hhga	SNP	tv	map_l150_m1_e0	homalt	99.7589	99.5945	99.9237	71.1191	3930	16	3930	3	3	100.0000
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	42.6673	30.3609	71.7500	71.1191	286	656	287	113	96	84.9558
gduggal-bwaplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	77.2658	65.4354	94.3182	71.1160	248	131	249	15	14	93.3333
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	91.6667	84.6154	100.0000	71.1111	11	2	13	0	0
ckim-isaac	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	72.3288	59.4595	92.3077	71.1111	22	15	24	2	1	50.0000
raldana-dualsentieon	SNP	ti	map_l150_m0_e0	homalt	99.4913	99.1670	99.8177	71.1111	2738	23	2738	5	4	80.0000
mlin-fermikit	SNP	ti	map_l100_m2_e1	hetalt	59.0909	41.9355	100.0000	71.1111	13	18	13	0	0
asubramanian-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.4134	99.1518	97.6860	71.1060	3507	30	4137	98	96	97.9592
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	97.2687	95.4802	99.1254	71.1036	338	16	340	3	3	100.0000
jpowers-varprowl	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.9095	98.1671	97.6533	71.1033	17246	322	17311	416	17	4.0865
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.0305	96.8370	99.2537	71.0999	398	13	399	3	3	100.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7298	99.6506	99.8091	71.0989	3137	11	3137	6	4	66.6667
bgallagher-sentieon	SNP	tv	map_l150_m2_e1	homalt	99.6486	99.4678	99.8301	71.0988	4112	22	4112	7	5	71.4286
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	94.3510	97.7144	91.2114	71.0965	5002	117	5376	518	61	11.7761
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	92.7242	86.9159	99.3644	71.0961	465	70	469	3	3	100.0000

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