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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 901 902 903 904 905 906 907 908 909 ... 1720 1721 » 45201-45250 / 86044 show all
eyeh-varpipe	SNP	*	map_l125_m2_e0	hetalt	99.7442	100.0000	99.4898	71.2188	30	0	195	1	0	0.0000
dgrover-gatk	SNP	*	map_l150_m2_e1	homalt	99.5206	99.1629	99.8808	71.2164	11728	99	11728	14	10	71.4286
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	61.9377	88.6347	47.6003	71.2150	1201	154	1210	1332	1313	98.5736
ndellapenna-hhga	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	93.9899	93.5543	94.4295	71.2140	60278	4153	60365	3561	3233	90.7891
anovak-vg	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.3470	92.5462	90.1786	71.2135	1403	113	1414	154	61	39.6104
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	86.2527	79.1632	94.7368	71.2121	946	249	18	1	0	0.0000
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	93.8053	88.3333	100.0000	71.2121	53	7	38	0	0
ckim-vqsr	INDEL	D6_15	HG002compoundhet	homalt	27.2727	100.0000	15.7895	71.2121	24	0	24	128	127	99.2188
hfeng-pmm3	SNP	*	map_l150_m1_e0	homalt	99.7427	99.7250	99.7604	71.2100	11242	31	11242	27	10	37.0370
dgrover-gatk	SNP	*	map_l150_m2_e0	homalt	99.5153	99.1538	99.8795	71.2083	11600	99	11600	14	10	71.4286
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	91.8894	87.0445	97.3054	71.2069	645	96	650	18	6	33.3333
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.0667	91.9708	98.3784	71.2062	378	33	364	6	5	83.3333
gduggal-bwaplat	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	76.3419	63.7874	95.0495	71.2046	384	218	384	20	20	100.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	86.4016	94.7971	79.3722	71.2035	911	50	885	230	217	94.3478
eyeh-varpipe	SNP	ti	map_l100_m2_e1	het	99.0385	99.6286	98.4553	71.2000	30845	115	30148	473	19	4.0169
asubramanian-gatk	INDEL	I16_PLUS	HG002complexvar	homalt	97.9133	98.7055	97.1338	71.1927	305	4	305	9	9	100.0000
gduggal-snapvard	SNP	tv	map_l150_m1_e0	homalt	97.7764	95.8439	99.7884	71.1912	3782	164	3772	8	6	75.0000
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.7427	95.4178	98.1050	71.1886	708	34	673	13	8	61.5385
ltrigg-rtg2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	98.3352	97.2892	99.4041	71.1873	9044	252	9174	55	55	100.0000
jli-custom	SNP	*	map_l100_m0_e0	hetalt	96.9697	100.0000	94.1176	71.1864	16	0	16	1	1	100.0000
jli-custom	SNP	tv	map_l100_m0_e0	hetalt	96.9697	100.0000	94.1176	71.1864	16	0	16	1	1	100.0000
mlin-fermikit	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	70.8184	55.4286	98.0392	71.1864	97	78	100	2	2	100.0000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.0265	98.4792	97.5780	71.1859	17548	271	17163	426	391	91.7840
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.9281	99.3885	98.4721	71.1857	3738	23	3738	58	56	96.5517
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.9281	99.3885	98.4721	71.1857	3738	23	3738	58	56	96.5517
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	79.0223	86.0771	73.0363	71.1846	915	148	1590	587	460	78.3646
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	92.3366	91.0042	93.7086	71.1832	435	43	566	38	38	100.0000
rpoplin-dv42	INDEL	D16_PLUS	*	het	94.0655	97.4042	90.9480	71.1818	3077	82	2974	296	276	93.2432
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	95.0905	95.4023	94.7808	71.1793	415	20	454	25	5	20.0000
eyeh-varpipe	SNP	ti	map_l100_m2_e0	het	99.0330	99.6245	98.4486	71.1792	30507	115	29825	470	19	4.0426
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	73.3639	62.2101	89.3910	71.1778	456	277	455	54	30	55.5556
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7612	99.6819	99.8407	71.1771	1880	6	1880	3	2	66.6667
hfeng-pmm3	SNP	*	map_l125_m2_e1	*	99.5664	99.4979	99.6351	71.1769	46965	237	46959	172	26	15.1163
jli-custom	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.2668	99.8469	96.7359	71.1719	652	1	652	22	22	100.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	84.9732	95.9483	76.2512	71.1719	1634	69	1615	503	405	80.5169
bgallagher-sentieon	INDEL	D6_15	map_l100_m1_e0	hetalt	95.4545	92.6471	98.4375	71.1712	63	5	63	1	0	0.0000
gduggal-snapplat	INDEL	*	HG002compoundhet	het	24.1644	34.9047	18.4785	71.1703	1429	2665	1727	7619	2083	27.3395
ckim-vqsr	SNP	*	map_siren	*	85.1088	74.3093	99.5811	71.1680	108661	37567	108641	457	31	6.7834
jli-custom	SNP	ti	map_l150_m1_e0	*	99.2008	98.8636	99.5403	71.1664	19488	224	19486	90	35	38.8889
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	89.9500	88.4615	91.4894	71.1656	46	6	43	4	4	100.0000
hfeng-pmm1	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6995	99.7594	99.6396	71.1645	30687	74	30687	111	109	98.1982
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	85.9341	80.4598	92.2078	71.1610	70	17	71	6	5	83.3333
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.6125	96.9110	96.3159	71.1607	3451	110	3451	132	77	58.3333
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	96.9484	97.0888	96.8085	71.1597	1334	40	1365	45	15	33.3333
raldana-dualsentieon	SNP	ti	map_l150_m2_e1	hetalt	100.0000	100.0000	100.0000	71.1538	15	0	15	0	0
ltrigg-rtg2	SNP	ti	map_l150_m0_e0	homalt	99.5276	99.2032	99.8541	71.1520	2739	22	2738	4	4	100.0000
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.2142	96.8491	97.5820	71.1510	584	19	565	14	5	35.7143
hfeng-pmm2	INDEL	I1_5	HG002complexvar	hetalt	98.0250	96.2341	99.8839	71.1509	1661	65	1720	2	2	100.0000
gduggal-snapfb	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	95.2178	95.1859	95.2497	71.1485	31636	1600	37135	1852	568	30.6695
ckim-isaac	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	94.8810	91.7722	98.2079	71.1479	290	26	274	5	4	80.0000

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