PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45001-45050 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | func_cds | * | 91.6667 | 91.6667 | 91.6667 | 71.4286 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 23.0769 | 100.0000 | 71.4286 | 3 | 10 | 2 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 71.4286 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 71.4286 | 4 | 1 | 4 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 72.9446 | 66.2921 | 81.0811 | 71.4286 | 59 | 30 | 60 | 14 | 14 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 71.4286 | 0 | 61 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 23.8185 | 13.7255 | 90.0000 | 71.4286 | 7 | 44 | 9 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 67.6923 | 66.6667 | 68.7500 | 71.4286 | 10 | 5 | 11 | 5 | 3 | 60.0000 | |
| dgrover-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 86.7925 | 76.6667 | 100.0000 | 71.4286 | 23 | 7 | 20 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 57.4031 | 85.2666 | 43.2650 | 71.4286 | 1551 | 268 | 1561 | 2047 | 2030 | 99.1695 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 57.4031 | 85.2666 | 43.2650 | 71.4286 | 1551 | 268 | 1561 | 2047 | 2030 | 99.1695 | |
| jmaeng-gatk | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | HG002compoundhet | * | 18.1818 | 100.0000 | 10.0000 | 71.4286 | 1 | 0 | 1 | 9 | 4 | 44.4444 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 10 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 71.4286 | 0 | 59 | 2 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 1 | 0 | 14 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 71.4286 | 8 | 4 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 50.5495 | 37.7049 | 76.6667 | 71.4286 | 23 | 38 | 23 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 51.8519 | 53.8462 | 50.0000 | 71.4286 | 7 | 6 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | tech_badpromoters | * | 75.4098 | 60.5263 | 100.0000 | 71.4286 | 46 | 30 | 46 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 71.4286 | 2 | 2 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 71.4286 | 1 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 71.4286 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 71.4286 | 28 | 2 | 28 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | HG002compoundhet | homalt | 6.5934 | 100.0000 | 3.4091 | 71.4286 | 3 | 0 | 3 | 85 | 85 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 18 | 0 | 0.0000 | ||