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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 896 897 898 899 900 901 902 903 904 ... 1720 1721 » 44951-45000 / 86044 show all
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	50.5167	46.3701	55.4778	71.4813	5806	6715	7292	5852	1482	25.3247
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7899	99.7908	99.7890	71.4801	477	1	473	1	1	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.4167	97.7259	97.1096	71.4786	6274	146	6249	186	32	17.2043
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.4167	97.7259	97.1096	71.4786	6274	146	6249	186	32	17.2043
hfeng-pmm1	SNP	ti	map_l125_m2_e0	het	99.2396	98.8716	99.6103	71.4782	18663	213	18659	73	18	24.6575
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	95.5134	92.4528	98.7835	71.4781	98	8	406	5	2	40.0000
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4220	98.8506	100.0000	71.4777	86	1	83	0	0
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	95.0884	99.7815	90.8168	71.4761	1827	4	1790	181	4	2.2099
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	77.9189	77.3944	78.4506	71.4753	2804	819	2876	790	545	68.9873
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0580	99.2555	98.8612	71.4717	3733	28	3733	43	43	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0580	99.2555	98.8612	71.4717	3733	28	3733	43	43	100.0000
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	62.9334	53.3333	76.7483	71.4713	440	385	439	133	119	89.4737
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	62.9334	53.3333	76.7483	71.4713	440	385	439	133	119	89.4737
eyeh-varpipe	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	91.9743	90.3292	93.6805	71.4710	58200	6231	60215	4062	3944	97.0950
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	71.1111	76.1905	66.6667	71.4710	128	40	128	64	63	98.4375
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7312	99.8094	99.6531	71.4710	3142	6	3160	11	8	72.7273
jli-custom	SNP	ti	map_l125_m0_e0	het	98.6256	98.1363	99.1199	71.4709	8109	154	8109	72	25	34.7222
hfeng-pmm3	SNP	tv	map_l125_m2_e1	*	99.5225	99.4777	99.5673	71.4702	16570	87	16568	72	10	13.8889
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	96.7613	96.7656	96.7570	71.4697	1825	61	1820	61	57	93.4426
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3925	99.2718	99.5134	71.4682	818	6	818	4	1	25.0000
jmaeng-gatk	SNP	*	map_siren	het	95.7096	93.4477	98.0837	71.4678	85029	5962	85015	1661	101	6.0807
raldana-dualsentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.1995	96.8094	99.6302	71.4676	15080	497	15087	56	47	83.9286
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.4377	95.6458	99.2980	71.4667	1296	59	1273	9	4	44.4444
ghariani-varprowl	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.4028	99.6568	95.2485	71.4664	1742	6	1744	87	49	56.3218
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.8012	99.6785	90.3790	71.4642	310	1	310	33	33	100.0000
ckim-gatk	INDEL	D16_PLUS	*	*	97.7762	97.9953	97.5581	71.4634	6648	136	6632	166	106	63.8554
jpowers-varprowl	INDEL	D16_PLUS	HG002complexvar	homalt	80.0982	75.0865	85.8268	71.4607	217	72	218	36	33	91.6667
gduggal-bwavard	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	33.8099	25.0000	52.2078	71.4603	209	627	201	184	169	91.8478
mlin-fermikit	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.1773	99.3135	93.2331	71.4592	1736	12	1736	126	98	77.7778
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1973	98.5845	99.8177	71.4580	63519	912	63531	116	89	76.7241
gduggal-bwavard	INDEL	D16_PLUS	*	het	72.3037	95.0301	58.3494	71.4553	3002	157	3026	2160	1899	87.9167
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.0096	95.7223	96.2986	71.4542	1544	69	1535	59	56	94.9153
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0051	99.4671	98.5473	71.4531	28559	153	28559	421	23	5.4632
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0051	99.4671	98.5473	71.4531	28559	153	28559	421	23	5.4632
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.8029	98.7545	98.8513	71.4513	6026	76	6024	70	13	18.5714
mlin-fermikit	INDEL	D16_PLUS	*	het	88.5250	92.6242	84.7733	71.4486	2926	233	2767	497	415	83.5010
ciseli-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	76.6853	89.2624	67.2148	71.4466	27458	3303	27386	13358	11870	88.8606
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	97.7191	97.1983	98.2456	71.4465	451	13	448	8	7	87.5000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0984	99.3619	98.8363	71.4448	3737	24	3737	44	44	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0984	99.3619	98.8363	71.4448	3737	24	3737	44	44	100.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.3320	98.9618	97.7101	71.4422	17634	185	17239	404	355	87.8713
bgallagher-sentieon	SNP	tv	map_l100_m2_e1	het	99.1255	99.5859	98.6693	71.4407	15872	66	15868	214	25	11.6822
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.2947	98.8383	97.7570	71.4388	17612	207	17215	395	354	89.6203
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.1559	97.0803	99.2556	71.4387	399	12	400	3	3	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	99.1411	98.2968	100.0000	71.4386	404	7	405	0	0
rpoplin-dv42	SNP	tv	map_l125_m2_e1	het	99.0048	98.9955	99.0141	71.4321	10447	106	10445	104	55	52.8846
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	70.1273	67.6890	72.7479	71.4311	3465	1654	3529	1322	311	23.5250
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7615	99.7879	99.7350	71.4307	1882	4	1882	5	4	80.0000
jli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	66.6667	50.0000	100.0000	71.4286	1	1	2	0	0
jli-custom	INDEL	I16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	71.4286	4	0	4	0	0

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