PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44801-44850 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | map_l125_m2_e1 | homalt | 98.8833 | 98.4030 | 99.3682 | 71.6795 | 5977 | 97 | 5977 | 38 | 24 | 63.1579 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | * | 98.9384 | 98.2221 | 99.6652 | 71.6791 | 10718 | 194 | 10718 | 36 | 17 | 47.2222 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e1 | het | 99.1114 | 98.9777 | 99.2454 | 71.6791 | 29337 | 303 | 29331 | 223 | 129 | 57.8475 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | * | 82.8010 | 79.0049 | 86.9802 | 71.6783 | 19357 | 5144 | 19347 | 2896 | 701 | 24.2058 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.7059 | 90.4494 | 99.3827 | 71.6783 | 161 | 17 | 161 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4127 | 97.2715 | 99.5810 | 71.6772 | 713 | 20 | 713 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | homalt | 93.0222 | 87.0616 | 99.8589 | 71.6753 | 6379 | 948 | 6370 | 9 | 9 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3690 | 99.6782 | 99.0618 | 71.6714 | 30662 | 99 | 30621 | 290 | 283 | 97.5862 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | homalt | 99.0914 | 98.3503 | 99.8438 | 71.6709 | 11506 | 193 | 11506 | 18 | 13 | 72.2222 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e0 | homalt | 98.8811 | 98.4045 | 99.3623 | 71.6697 | 5921 | 96 | 5921 | 38 | 24 | 63.1579 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.6303 | 99.8788 | 95.4809 | 71.6678 | 824 | 1 | 824 | 39 | 38 | 97.4359 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.6303 | 99.8788 | 95.4809 | 71.6678 | 824 | 1 | 824 | 39 | 38 | 97.4359 | |
| gduggal-snapvard | INDEL | * | map_siren | homalt | 89.9289 | 83.0132 | 98.1015 | 71.6674 | 2204 | 451 | 2377 | 46 | 40 | 86.9565 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | homalt | 99.0927 | 98.3512 | 99.8455 | 71.6669 | 11632 | 195 | 11632 | 18 | 13 | 72.2222 | |
| gduggal-bwaplat | INDEL | * | * | hetalt | 82.4487 | 71.6091 | 97.1551 | 71.6669 | 18072 | 7165 | 18066 | 529 | 513 | 96.9754 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.9727 | 76.0163 | 98.9305 | 71.6667 | 187 | 59 | 185 | 2 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | homalt | 99.2485 | 98.7329 | 99.7695 | 71.6659 | 3896 | 50 | 3896 | 9 | 9 | 100.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | * | 97.5647 | 98.0226 | 97.1111 | 71.6649 | 24538 | 495 | 24539 | 730 | 232 | 31.7808 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.8974 | 96.3612 | 97.4395 | 71.6647 | 715 | 27 | 685 | 18 | 7 | 38.8889 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 89.7995 | 82.2060 | 98.9387 | 71.6625 | 45732 | 9899 | 45775 | 491 | 144 | 29.3279 | |
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | homalt | 99.3844 | 98.8644 | 99.9100 | 71.6564 | 4440 | 51 | 4440 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8184 | 94.7230 | 94.9141 | 71.6532 | 1436 | 80 | 1437 | 77 | 43 | 55.8442 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9624 | 98.4167 | 99.5141 | 71.6519 | 3481 | 56 | 3482 | 17 | 15 | 88.2353 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.0820 | 92.6941 | 95.5121 | 71.6510 | 1827 | 144 | 1809 | 85 | 58 | 68.2353 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.0820 | 92.6941 | 95.5121 | 71.6510 | 1827 | 144 | 1809 | 85 | 58 | 68.2353 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 58.6404 | 73.8255 | 48.6364 | 71.6495 | 110 | 39 | 107 | 113 | 113 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 61.1726 | 50.2392 | 78.1885 | 71.6457 | 420 | 416 | 423 | 118 | 117 | 99.1525 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 63.4268 | 61.9457 | 64.9805 | 71.6420 | 3171 | 1948 | 4342 | 2340 | 1455 | 62.1795 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 47.9906 | 38.1180 | 64.7645 | 71.6412 | 7571 | 12291 | 10067 | 5477 | 926 | 16.9071 | |
| dgrover-gatk | SNP | * | map_l100_m2_e1 | het | 99.3747 | 99.4755 | 99.2742 | 71.6392 | 46652 | 246 | 46641 | 341 | 63 | 18.4751 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6357 | 95.4248 | 97.8778 | 71.6350 | 1168 | 56 | 1153 | 25 | 8 | 32.0000 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | het | 99.3085 | 99.0328 | 99.5858 | 71.6339 | 10341 | 101 | 10339 | 43 | 11 | 25.5814 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3854 | 100.0000 | 98.7784 | 71.6337 | 564 | 0 | 566 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e0 | het | 99.1051 | 98.9733 | 99.2372 | 71.6337 | 29017 | 301 | 29011 | 223 | 129 | 57.8475 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8842 | 99.8788 | 94.0639 | 71.6321 | 824 | 1 | 824 | 52 | 50 | 96.1538 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8842 | 99.8788 | 94.0639 | 71.6321 | 824 | 1 | 824 | 52 | 50 | 96.1538 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9195 | 97.9163 | 99.9436 | 71.6321 | 5310 | 113 | 5314 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9195 | 97.9163 | 99.9436 | 71.6321 | 5310 | 113 | 5314 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | * | map_l100_m2_e0 | het | 99.3701 | 99.4698 | 99.2707 | 71.6313 | 46153 | 246 | 46142 | 339 | 63 | 18.5841 | |
| jli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.8967 | 99.3952 | 98.4032 | 71.6308 | 986 | 6 | 986 | 16 | 2 | 12.5000 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | * | 98.0534 | 97.7615 | 98.3471 | 71.6291 | 73064 | 1673 | 73066 | 1228 | 334 | 27.1987 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.0233 | 88.2353 | 98.3607 | 71.6279 | 60 | 8 | 60 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5140 | 99.3932 | 99.6350 | 71.6258 | 819 | 5 | 819 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 82.8316 | 98.2639 | 71.5886 | 71.6226 | 1415 | 25 | 1406 | 558 | 11 | 1.9713 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 71.6216 | 43 | 0 | 42 | 0 | 0 | ||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.9799 | 99.5261 | 87.2417 | 71.6212 | 1680 | 8 | 1689 | 247 | 126 | 51.0121 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 69.6084 | 54.3247 | 96.8586 | 71.6196 | 358 | 301 | 370 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 69.6084 | 54.3247 | 96.8586 | 71.6196 | 358 | 301 | 370 | 12 | 11 | 91.6667 | |