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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 891 892 893 894 895 896 897 898 899 ... 1720 1721 » 44701-44750 / 86044 show all
hfeng-pmm1	SNP	tv	map_l150_m1_e0	homalt	99.7086	99.7212	99.6960	71.8212	3935	11	3935	12	4	33.3333
gduggal-bwaplat	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	92.0320	86.1800	98.7365	71.8190	15384	2467	15395	197	56	28.4264
eyeh-varpipe	SNP	ti	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	71.8157	15	0	104	0	0
hfeng-pmm3	INDEL	D1_5	HG002complexvar	hetalt	97.5431	95.3402	99.8501	71.8149	1289	63	1332	2	0	0.0000
rpoplin-dv42	SNP	ti	map_l125_m2_e1	het	99.1705	98.9679	99.3738	71.8144	18890	197	18886	119	74	62.1849
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2667	99.3211	99.2123	71.8135	5559	38	5542	44	35	79.5455
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	88.7875	97.1564	81.7460	71.8121	205	6	206	46	45	97.8261
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	18.8114	10.6154	82.5397	71.8121	69	581	104	22	17	77.2727
astatham-gatk	SNP	*	map_l100_m2_e1	hetalt	98.8235	97.6744	100.0000	71.8121	42	1	42	0	0
astatham-gatk	SNP	tv	map_l100_m2_e1	hetalt	98.8235	97.6744	100.0000	71.8121	42	1	42	0	0
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.5385	96.3504	98.7562	71.8093	396	15	397	5	5	100.0000
gduggal-snapfb	SNP	tv	map_l100_m1_e0	homalt	98.3618	97.2686	99.4798	71.8035	8796	247	8797	46	9	19.5652
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.8343	98.2863	99.3884	71.8022	975	17	975	6	2	33.3333
ckim-isaac	SNP	tv	map_l125_m1_e0	*	70.3696	54.3831	99.6682	71.7978	8710	7306	8712	29	9	31.0345
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	83.6913	86.7444	80.8458	71.7974	1636	250	1625	385	278	72.2078
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	63.5401	48.8372	90.9091	71.7949	21	22	20	2	2	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	*	91.6667	84.6154	100.0000	71.7949	11	2	11	0	0
mlin-fermikit	INDEL	D6_15	map_l100_m0_e0	hetalt	66.6667	52.6316	90.9091	71.7949	10	9	10	1	0	0.0000
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	90.2936	98.1609	83.5938	71.7906	427	8	428	84	76	90.4762
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.7368	93.2088	96.3158	71.7892	1098	80	1098	42	35	83.3333
ckim-isaac	SNP	*	map_l100_m0_e0	het	77.3393	63.1643	99.7172	71.7888	13394	7811	13397	38	6	15.7895
ltrigg-rtg2	INDEL	I16_PLUS	map_siren	*	81.8182	73.2558	92.6471	71.7842	63	23	63	5	3	60.0000
raldana-dualsentieon	SNP	*	map_l150_m0_e0	homalt	99.5464	99.2908	99.8033	71.7833	4060	29	4060	8	5	62.5000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	96.5003	95.5391	97.4811	71.7827	4776	223	4760	123	101	82.1138
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	96.5003	95.5391	97.4811	71.7827	4776	223	4760	123	101	82.1138
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	99.0536	100.0000	98.1250	71.7813	157	0	157	3	0	0.0000
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	92.5543	91.9137	93.2039	71.7808	682	60	672	49	46	93.8776
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	94.7156	93.6364	95.8199	71.7786	309	21	298	13	9	69.2308
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	66.8212	95.0125	51.5313	71.7775	381	20	387	364	344	94.5055
rpoplin-dv42	SNP	ti	map_l125_m2_e0	het	99.1665	98.9669	99.3669	71.7774	18681	195	18677	119	74	62.1849
hfeng-pmm2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5485	99.7455	99.3523	71.7771	3528	9	3528	23	22	95.6522
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8754	99.0250	98.7263	71.7769	5789	57	5736	74	67	90.5405
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8754	99.0250	98.7263	71.7769	5789	57	5736	74	67	90.5405
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.5242	99.6649	93.5754	71.7749	2677	9	2680	184	9	4.8913
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6673	99.4468	99.8889	71.7685	5393	30	5393	6	6	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6673	99.4468	99.8889	71.7685	5393	30	5393	6	6	100.0000
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	33.1333	24.7505	50.1027	71.7681	248	754	244	243	215	88.4774
eyeh-varpipe	SNP	ti	map_l100_m0_e0	*	99.1630	99.6279	98.7023	71.7657	21690	81	21373	281	15	5.3381
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	95.8333	95.8333	95.8333	71.7647	23	1	23	1	1	100.0000
ltrigg-rtg1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.5349	91.6667	87.5000	71.7647	22	2	21	3	3	100.0000
ciseli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	89.3094	98.5239	81.6710	71.7637	3404	51	3431	770	248	32.2078
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5579	99.8227	99.2945	71.7629	563	1	563	4	4	100.0000
ltrigg-rtg1	INDEL	I1_5	*	hetalt	96.8345	94.0598	99.7778	71.7595	10530	665	10776	24	24	100.0000
hfeng-pmm3	INDEL	D6_15	map_l100_m1_e0	hetalt	94.5736	89.7059	100.0000	71.7593	61	7	61	0	0
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	71.7593	122	0	122	0	0
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	33.4604	24.1319	54.5455	71.7587	139	437	120	100	1	1.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	71.7576	230	0	230	3	2	66.6667
cchapple-custom	SNP	tv	map_l100_m2_e1	*	97.2075	97.9156	96.5096	71.7543	24756	527	24747	895	134	14.9721
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	93.8416	89.8876	98.1595	71.7504	160	18	160	3	2	66.6667
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.2192	98.7929	99.6492	71.7503	3110	38	3125	11	9	81.8182

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