PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 890 891 892 893 894 895 896 897 898 ... 1720 1721 » 44651-44700 / 86044 show all
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6805	98.7990	98.5623	71.8841	1234	15	1234	18	12	66.6667
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6805	98.7990	98.5623	71.8841	1234	15	1234	18	12	66.6667
anovak-vg	SNP	tv	map_l100_m2_e0	*	83.6288	89.4260	78.5375	71.8835	22386	2647	22351	6108	1319	21.5946
jli-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5913	99.8586	99.3255	71.8824	3532	5	3534	24	24	100.0000
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.5141	98.0044	99.0291	71.8816	1326	27	1326	13	8	61.5385
raldana-dualsentieon	SNP	tv	map_l125_m2_e0	*	99.2122	99.2904	99.1340	71.8789	16372	117	16370	143	4	2.7972
ndellapenna-hhga	SNP	ti	map_l150_m0_e0	homalt	99.5641	99.2756	99.8543	71.8779	2741	20	2741	4	4	100.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	96.4104	94.8905	97.9798	71.8750	390	21	388	8	8	100.0000
mlin-fermikit	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	63.6364	53.8462	77.7778	71.8750	7	6	7	2	2	100.0000
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	74.2076	65.4545	85.6631	71.8750	252	133	239	40	3	7.5000
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1340	98.9224	99.3464	71.8750	459	5	456	3	1	33.3333
jlack-gatk	INDEL	I16_PLUS	func_cds	het	100.0000	100.0000	100.0000	71.8750	9	0	9	0	0
ltrigg-rtg1	SNP	*	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	71.8750	9	0	9	0	0
ltrigg-rtg1	SNP	tv	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	71.8750	9	0	9	0	0
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.2456	96.5517	100.0000	71.8750	84	3	81	0	0
eyeh-varpipe	SNP	tv	tech_badpromoters	*	78.6517	100.0000	64.8148	71.8750	72	0	70	38	0	0.0000
bgallagher-sentieon	SNP	tv	map_l125_m1_e0	*	99.1503	99.4630	98.8396	71.8727	15930	86	15928	187	28	14.9733
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.8571	97.7401	100.0000	71.8699	173	4	173	0	0
ltrigg-rtg2	SNP	*	map_l150_m0_e0	homalt	99.5584	99.2419	99.8769	71.8698	4058	31	4057	5	4	80.0000
ckim-dragen	INDEL	D1_5	HG002complexvar	hetalt	94.4661	92.3817	96.6468	71.8658	1249	103	1297	45	45	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.5725	99.8788	95.3704	71.8658	824	1	824	40	38	95.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.5725	99.8788	95.3704	71.8658	824	1	824	40	38	95.0000
jli-custom	SNP	tv	map_l125_m0_e0	het	98.4127	97.9096	98.9210	71.8623	4309	92	4309	47	14	29.7872
egarrison-hhga	SNP	ti	map_l125_m2_e0	het	99.2599	98.7550	99.7699	71.8619	18641	235	18641	43	16	37.2093
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	91.2944	90.1145	92.5056	71.8602	866	95	827	67	61	91.0448
ltrigg-rtg1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6359	97.7403	99.5481	71.8594	15225	352	15420	70	31	44.2857
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.8140	91.9643	100.0000	71.8579	103	9	103	0	0
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	81.6591	71.1864	95.7447	71.8563	42	17	45	2	2	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	93.1288	90.9722	95.3901	71.8563	262	26	269	13	1	7.6923
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	89.7763	83.1250	97.5845	71.8559	399	81	404	10	10	100.0000
ckim-gatk	INDEL	I16_PLUS	*	homalt	97.7080	99.6797	95.8128	71.8495	1556	5	1556	68	67	98.5294
ckim-vqsr	INDEL	I16_PLUS	*	homalt	97.7080	99.6797	95.8128	71.8495	1556	5	1556	68	67	98.5294
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	72.9858	100.0000	57.4627	71.8487	74	0	77	57	0	0.0000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	97.2251	99.7837	94.7945	71.8473	1384	3	1384	76	5	6.5790
ltrigg-rtg2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0742	98.7301	99.4207	71.8442	47658	613	47540	277	83	29.9639
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.1723	98.0188	98.3264	71.8409	940	19	940	16	9	56.2500
egarrison-hhga	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	92.6472	93.4150	91.8919	71.8393	610	43	612	54	41	75.9259
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	32.9974	26.9036	42.6601	71.8368	318	864	433	582	472	81.0997
ciseli-custom	SNP	*	map_l100_m2_e0	*	85.1771	81.9318	88.6900	71.8362	60600	13364	60413	7704	2033	26.3889
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	45.3035	36.1272	60.7287	71.8358	125	221	150	97	38	39.1753
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8880	99.8233	99.9528	71.8323	16945	30	16945	8	5	62.5000
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8880	99.8233	99.9528	71.8323	16945	30	16945	8	5	62.5000
ciseli-custom	SNP	*	map_l100_m2_e1	*	85.2411	82.0102	88.7370	71.8319	61292	13445	61099	7755	2048	26.4088
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	89.5432	89.7781	89.3096	71.8319	3601	410	3609	432	17	3.9352
anovak-vg	SNP	ti	map_l100_m1_e0	het	80.6718	90.3580	72.8613	71.8309	27055	2887	26845	9999	2187	21.8722
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	91.5006	95.9083	87.4802	71.8304	586	25	552	79	77	97.4684
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9726	98.5812	99.3672	71.8268	15356	221	15545	99	39	39.3939
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	71.8245	122	0	122	0	0
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6719	99.4905	99.8540	71.8223	1367	7	1368	2	0	0.0000
gduggal-snapvard	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	90.9891	97.2501	85.4856	71.8215	34445	974	34119	5793	280	4.8334

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge