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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 887 888 889 890 891 892 893 894 895 ... 1720 1721 » 44501-44550 / 86044 show all
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5579	99.8227	99.2945	72.0827	563	1	563	4	4	100.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	72.0824	122	0	122	0	0
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.7434	96.7060	96.7809	72.0820	2378	81	2345	78	34	43.5897
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.9636	95.9660	97.9821	72.0814	904	38	874	18	7	38.8889
cchapple-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.2140	99.2589	99.1691	72.0797	2009	15	2029	17	3	17.6471
ckim-isaac	SNP	ti	map_siren	hetalt	70.4545	54.3860	100.0000	72.0721	31	26	31	0	0
mlin-fermikit	INDEL	D6_15	map_l100_m2_e1	hetalt	59.0289	42.4658	96.7742	72.0721	31	42	30	1	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.8852	99.5902	96.2376	72.0686	486	2	486	19	18	94.7368
ckim-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.8852	99.5902	96.2376	72.0686	486	2	486	19	18	94.7368
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6991	97.6504	99.7706	72.0664	15211	366	15219	35	25	71.4286
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	92.7974	97.3813	88.6256	72.0653	595	16	561	72	68	94.4444
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6460	99.8227	99.4700	72.0632	563	1	563	3	3	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1552	98.5347	99.7836	72.0617	32749	487	32742	71	45	63.3803
gduggal-snapfb	INDEL	*	HG002compoundhet	homalt	22.9146	84.6939	13.2497	72.0594	581	105	581	3804	3669	96.4511
gduggal-snapvard	INDEL	D6_15	map_siren	homalt	57.7796	43.0769	87.7193	72.0588	56	74	50	7	7	100.0000
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	51.0900	47.6832	55.0210	72.0588	1698	1863	1704	1393	1371	98.4207
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.5802	99.2727	94.0299	72.0565	819	6	819	52	51	98.0769
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.5802	99.2727	94.0299	72.0565	819	6	819	52	51	98.0769
gduggal-snapvard	SNP	tv	map_l125_m0_e0	homalt	97.4654	95.2274	99.8111	72.0544	2115	106	2114	4	3	75.0000
ckim-dragen	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.9156	98.4914	99.3435	72.0489	457	7	454	3	1	33.3333
raldana-dualsentieon	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6413	97.9883	99.3029	72.0487	92549	1900	92457	649	588	90.6009
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	58.3031	43.3824	88.8679	72.0464	472	616	471	59	57	96.6102
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	89.7196	81.3559	100.0000	72.0430	48	11	52	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.8690	98.8710	96.8872	72.0428	5780	66	5727	184	169	91.8478
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.8690	98.8710	96.8872	72.0428	5780	66	5727	184	169	91.8478
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	86.6705	87.5205	85.8369	72.0400	533	76	600	99	82	82.8283
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	80.7760	79.8611	81.7121	72.0348	230	58	210	47	30	63.8298
cchapple-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.8587	98.7069	99.0109	72.0332	2977	39	3003	30	3	10.0000
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.5642	94.2559	87.1508	72.0313	361	22	312	46	20	43.4783
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8246	99.7050	99.9445	72.0298	5407	16	5407	3	2	66.6667
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8246	99.7050	99.9445	72.0298	5407	16	5407	3	2	66.6667
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	72.0288	230	0	230	3	2	66.6667
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	72.0288	230	0	230	3	2	66.6667
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	81.1020	68.6047	99.1667	72.0280	118	54	119	1	1	100.0000
bgallagher-sentieon	INDEL	I16_PLUS	*	homalt	97.0698	99.7438	94.5355	72.0279	1557	4	1557	90	87	96.6667
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	96.1405	97.7087	94.6218	72.0263	597	14	563	32	32	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	92.2217	96.5630	88.2540	72.0249	590	21	556	74	70	94.5946
jpowers-varprowl	SNP	tv	map_l100_m1_e0	*	97.6764	97.6246	97.7283	72.0238	23919	582	23919	556	138	24.8201
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7450	99.6361	99.8542	72.0228	1369	5	1370	2	0	0.0000
anovak-vg	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	47.9368	36.5290	69.7055	72.0207	2229	3873	9137	3971	2851	71.7955
hfeng-pmm3	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	95.4016	92.2695	98.7539	72.0200	1301	109	1268	16	9	56.2500
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	84.8521	85.8447	83.8821	72.0175	752	124	968	186	175	94.0860
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.8242	99.0991	98.5507	72.0171	1320	12	1292	19	15	78.9474
ndellapenna-hhga	SNP	*	map_l125_m0_e0	*	98.7976	97.9108	99.7006	72.0168	18980	405	18980	57	29	50.8772
jli-custom	INDEL	D6_15	HG002compoundhet	homalt	40.0000	100.0000	25.0000	72.0117	24	0	24	72	72	100.0000
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	32.1041	23.2033	52.0833	72.0117	113	374	100	92	1	1.0870
ghariani-varprowl	SNP	*	map_l100_m2_e1	*	98.3564	99.0460	97.6764	72.0101	74024	713	74027	1761	324	18.3986
ghariani-varprowl	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	70.9804	63.9576	79.7357	72.0099	181	102	181	46	33	71.7391
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.8093	99.7776	99.8411	72.0082	3141	7	3141	5	3	60.0000
ghariani-varprowl	INDEL	*	*	*	87.2025	87.3272	87.0781	72.0067	300877	43663	300632	44612	40345	90.4353

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