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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 886 887 888 889 890 891 892 893 894 ... 1720 1721 » 44451-44500 / 86044 show all
astatham-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.9798	99.3852	96.6135	72.1575	485	3	485	17	16	94.1176
anovak-vg	SNP	*	map_l100_m1_e0	het	80.4155	91.0315	72.0169	72.1565	41291	4068	40830	15865	3407	21.4749
jlack-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	90.4762	82.6087	100.0000	72.1519	19	4	22	0	0
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	80.1527	66.8790	100.0000	72.1485	105	52	105	0	0
astatham-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.5692	99.3032	97.8460	72.1465	5558	39	5542	122	111	90.9836
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6719	99.4905	99.8539	72.1465	1367	7	1367	2	0	0.0000
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	66.0556	65.0014	67.1446	72.1458	2355	1268	3278	1604	1089	67.8928
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.2008	97.1098	95.3086	72.1458	336	10	386	19	9	47.3684
gduggal-bwaplat	INDEL	D16_PLUS	HG002compoundhet	het	64.7528	50.1235	91.4414	72.1455	203	202	203	19	18	94.7368
gduggal-snapvard	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	9.1482	5.4613	28.1579	72.1408	74	1281	107	273	176	64.4689
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.3978	94.1426	96.6870	72.1399	1109	69	1109	38	29	76.3158
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	64.0490	51.5152	84.6429	72.1393	238	224	237	43	41	95.3488
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.2224	95.1576	99.3788	72.1373	16153	822	16158	101	53	52.4752
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.2224	95.1576	99.3788	72.1373	16153	822	16158	101	53	52.4752
raldana-dualsentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3948	99.8304	98.9630	72.1359	3531	6	3531	37	37	100.0000
ckim-dragen	SNP	*	map_l100_m1_e0	het	98.1047	99.2152	97.0189	72.1356	45003	356	45009	1383	119	8.6045
gduggal-bwafb	SNP	ti	map_l125_m1_e0	*	98.9304	98.8478	99.0132	72.1354	28997	338	28997	289	84	29.0657
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het	96.9697	100.0000	94.1176	72.1311	16	0	16	1	1	100.0000
gduggal-snapfb	SNP	tv	map_l125_m1_e0	het	96.2891	97.8866	94.7429	72.1296	9912	214	9912	550	205	37.2727
astatham-gatk	SNP	ti	map_l100_m0_e0	*	92.5350	86.2891	99.7557	72.1287	18786	2985	18783	46	24	52.1739
ghariani-varprowl	SNP	tv	map_l100_m1_e0	*	97.8612	98.9756	96.7717	72.1277	24250	251	24251	809	135	16.6873
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.1804	89.8785	98.9147	72.1262	666	75	638	7	5	71.4286
rpoplin-dv42	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0945	98.9337	99.2558	72.1244	63744	687	63755	478	442	92.4686
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7091	99.9470	99.4723	72.1242	1885	1	1885	10	9	90.0000
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	93.0643	93.0175	93.1111	72.1190	373	28	419	31	26	83.8710
bgallagher-sentieon	INDEL	D1_5	HG002complexvar	hetalt	94.8411	92.8994	96.8657	72.1182	1256	96	1298	42	42	100.0000
astatham-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3499	98.9224	99.7812	72.1171	459	5	456	1	0	0.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5109	97.3461	99.7039	72.1148	27950	762	27950	83	24	28.9157
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5109	97.3461	99.7039	72.1148	27950	762	27950	83	24	28.9157
hfeng-pmm3	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8197	99.8356	99.8037	72.1124	21863	36	21863	43	42	97.6744
ndellapenna-hhga	SNP	*	map_l150_m1_e0	*	99.0061	98.2783	99.7447	72.1099	30082	527	30082	77	40	51.9481
egarrison-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.4466	96.5190	98.3923	72.1076	305	11	306	5	5	100.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	72.1053	53	0	53	0	0
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	71.6762	82.1328	63.5814	72.1033	1756	382	2734	1566	1053	67.2414
ckim-isaac	INDEL	I16_PLUS	HG002compoundhet	het	19.1083	31.9149	13.6364	72.1014	15	32	21	133	118	88.7218
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	96.6684	95.5791	97.7828	72.0972	4778	221	4763	108	70	64.8148
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	96.6684	95.5791	97.7828	72.0972	4778	221	4763	108	70	64.8148
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	72.0958	230	0	230	3	2	66.6667
mlin-fermikit	SNP	ti	map_l100_m2_e0	hetalt	57.1429	40.0000	100.0000	72.0930	12	18	12	0	0
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.2818	96.6216	100.0000	72.0930	429	15	420	0	0
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.2604	90.1484	98.7654	72.0930	668	73	640	8	6	75.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5772	99.8940	99.2624	72.0923	1884	2	1884	14	11	78.5714
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	96.2429	94.0621	98.5272	72.0921	697	44	669	10	8	80.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7936	99.6701	99.9173	72.0908	16919	56	16921	14	4	28.5714
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7936	99.6701	99.9173	72.0908	16919	56	16921	14	4	28.5714
astatham-gatk	INDEL	I16_PLUS	*	homalt	97.6467	99.6797	95.6950	72.0858	1556	5	1556	70	68	97.1429
jmaeng-gatk	INDEL	I16_PLUS	*	homalt	97.5243	99.6797	95.4601	72.0843	1556	5	1556	74	69	93.2432
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.3072	97.2880	99.3480	72.0840	3659	102	3657	24	22	91.6667
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.3072	97.2880	99.3480	72.0840	3659	102	3657	24	22	91.6667
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1381	98.8474	99.4304	72.0835	5060	59	5237	30	24	80.0000

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