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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 883 884 885 886 887 888 889 890 891 ... 1720 1721 » 44301-44350 / 86044 show all
asubramanian-gatk	INDEL	C6_15	HG002complexvar	het	0.0000	100.0000	0.0000	72.3577	4	0	0	68	0	0.0000
gduggal-bwaplat	SNP	*	map_l100_m2_e0	homalt	75.9766	61.2688	99.9763	72.3553	16863	10660	16851	4	4	100.0000
ndellapenna-hhga	SNP	ti	map_l150_m1_e0	*	99.0365	98.2955	99.7888	72.3511	19376	336	19376	41	23	56.0976
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6208	99.3177	99.9258	72.3505	5386	37	5386	4	4	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6208	99.3177	99.9258	72.3505	5386	37	5386	4	4	100.0000
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	84.9558	90.5660	80.0000	72.3502	48	5	48	12	12	100.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.7732	97.1519	98.4026	72.3498	307	9	308	5	5	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3506	99.1379	99.5643	72.3494	460	4	457	2	0	0.0000
gduggal-snapvard	INDEL	C6_15	HG002complexvar	*	72.1017	100.0000	56.3743	72.3480	4	0	482	373	150	40.2145
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.6903	99.1511	98.2338	72.3424	1168	10	1168	21	21	100.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	84.0000	87.5000	80.7692	72.3404	21	3	21	5	5	100.0000
raldana-dualsentieon	INDEL	D6_15	map_siren	hetalt	95.7895	91.9192	100.0000	72.3404	91	8	91	0	0
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	90.7407	83.0508	100.0000	72.3404	49	10	52	0	0
ltrigg-rtg1	INDEL	I16_PLUS	map_l100_m2_e0	het	77.4194	66.6667	92.3077	72.3404	12	6	12	1	0	0.0000
ltrigg-rtg1	INDEL	I16_PLUS	map_l100_m2_e1	het	77.4194	66.6667	92.3077	72.3404	12	6	12	1	0	0.0000
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	2.5316	100.0000	1.2821	72.3404	1	0	1	77	2	2.5974
egarrison-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	72.2222	56.5217	100.0000	72.3404	13	10	13	0	0
gduggal-bwaplat	INDEL	*	tech_badpromoters	het	80.0000	66.6667	100.0000	72.3404	26	13	26	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.6403	99.3747	97.9167	72.3397	5562	35	5546	118	106	89.8305
hfeng-pmm3	SNP	tv	map_l125_m2_e1	het	99.3837	99.3272	99.4402	72.3386	10482	71	10480	59	5	8.4746
raldana-dualsentieon	INDEL	D1_5	HG002complexvar	hetalt	97.5400	95.2663	99.9249	72.3364	1288	64	1331	1	1	100.0000
ckim-isaac	SNP	ti	map_l125_m2_e1	*	75.3035	60.4665	99.7895	72.3331	18484	12085	18484	39	8	20.5128
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.7197	96.1682	97.2776	72.3295	6174	246	6146	172	65	37.7907
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.7197	96.1682	97.2776	72.3295	6174	246	6146	172	65	37.7907
ckim-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2889	98.3993	98.1788	72.3290	3504	57	3504	65	45	69.2308
gduggal-bwafb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	93.9690	91.1857	96.9275	72.3266	14204	1373	12524	397	332	83.6272
eyeh-varpipe	SNP	tv	map_l100_m2_e1	het	96.0176	99.7490	92.5553	72.3251	15898	40	15702	1263	16	1.2668
hfeng-pmm3	SNP	*	map_l125_m2_e1	het	99.4275	99.3320	99.5233	72.3246	29442	198	29436	141	13	9.2199
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.9550	99.7815	94.2842	72.3244	1827	4	1831	111	5	4.5045
jlack-gatk	SNP	tv	map_l150_m2_e0	homalt	99.1124	98.4570	99.7766	72.3207	4020	63	4020	9	6	66.6667
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.9145	99.4543	98.3806	72.3198	729	4	729	12	12	100.0000
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.5183	97.1076	97.9326	72.3189	3458	103	3458	73	57	78.0822
hfeng-pmm3	SNP	tv	map_l125_m0_e0	homalt	99.4597	99.4597	99.4597	72.3171	2209	12	2209	12	4	33.3333
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.1114	98.9086	99.3151	72.3170	725	8	725	5	5	100.0000
hfeng-pmm3	SNP	ti	map_l125_m2_e1	het	99.4518	99.3346	99.5693	72.3168	18960	127	18956	82	8	9.7561
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4475	98.9011	100.0000	72.3149	540	6	531	0	0
ckim-isaac	SNP	ti	map_l125_m2_e0	*	75.2532	60.4006	99.7925	72.3144	18276	11982	18276	38	7	18.4211
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
jmaeng-gatk	SNP	tv	map_l100_m0_e0	homalt	75.4210	60.5564	99.9571	72.3081	2329	1517	2329	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.6989	94.3463	97.0909	72.3061	267	16	267	8	8	100.0000
ghariani-varprowl	SNP	*	map_l150_m1_e0	homalt	98.8738	98.1283	99.6307	72.3027	11062	211	11062	41	25	60.9756
raldana-dualsentieon	SNP	ti	map_l125_m1_e0	het	98.7264	98.8941	98.5593	72.2989	18064	202	18060	264	3	1.1364
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	98.6857	97.8861	99.4985	72.2979	1667	36	1984	10	2	20.0000
bgallagher-sentieon	SNP	*	map_l100_m2_e1	hetalt	97.6190	95.3488	100.0000	72.2973	41	2	41	0	0
bgallagher-sentieon	SNP	tv	map_l100_m2_e1	hetalt	97.6190	95.3488	100.0000	72.2973	41	2	41	0	0
astatham-gatk	SNP	*	map_l100_m2_e0	hetalt	98.7952	97.6190	100.0000	72.2973	41	1	41	0	0
astatham-gatk	SNP	tv	map_l100_m2_e0	hetalt	98.7952	97.6190	100.0000	72.2973	41	1	41	0	0
gduggal-bwaplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	82.6590	71.5000	97.9452	72.2960	143	57	143	3	3	100.0000
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	37.3854	26.5403	63.2184	72.2930	56	155	55	32	21	65.6250

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