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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 882 883 884 885 886 887 888 889 890 ... 1720 1721 » 44251-44300 / 86044 show all
ckim-gatk	INDEL	D1_5	HG002complexvar	hetalt	92.5788	88.8314	96.6563	72.4212	1201	151	1243	43	43	100.0000
ckim-vqsr	INDEL	D1_5	HG002complexvar	hetalt	92.5788	88.8314	96.6563	72.4212	1201	151	1243	43	43	100.0000
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	83.1419	76.6600	90.8213	72.4184	381	116	376	38	25	65.7895
gduggal-snapfb	INDEL	I6_15	map_l100_m1_e0	hetalt	66.1017	59.0909	75.0000	72.4138	13	9	6	2	2	100.0000
gduggal-snapfb	INDEL	I6_15	map_l100_m2_e0	hetalt	66.1017	59.0909	75.0000	72.4138	13	9	6	2	2	100.0000
gduggal-snapfb	INDEL	I6_15	map_l100_m2_e1	hetalt	66.1017	59.0909	75.0000	72.4138	13	9	6	2	2	100.0000
jpowers-varprowl	INDEL	D16_PLUS	func_cds	het	87.5000	87.5000	87.5000	72.4138	7	1	7	1	1	100.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	95.8333	95.8333	95.8333	72.4138	23	1	23	1	1	100.0000
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	69.6011	56.0976	91.6667	72.4138	23	18	22	2	0	0.0000
gduggal-bwaplat	INDEL	D6_15	tech_badpromoters	*	64.0000	47.0588	100.0000	72.4138	8	9	8	0	0
ndellapenna-hhga	SNP	*	map_l150_m2_e1	homalt	99.6950	99.4842	99.9066	72.4121	11766	61	11766	11	10	90.9091
gduggal-snapvard	INDEL	C6_15	HG002compoundhet	*	0.0000	0.0000	25.1969	72.4113	0	0	96	285	78	27.3684
ndellapenna-hhga	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.6340	97.1321	98.1411	72.4105	5927	175	5913	112	49	43.7500
asubramanian-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.0123	98.3920	97.6356	72.4102	5507	90	5492	133	121	90.9774
gduggal-bwafb	SNP	*	map_l125_m1_e0	*	98.8277	98.8550	98.8005	72.4101	44808	519	44808	544	134	24.6324
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.9291	98.9219	93.1120	72.4097	16792	183	16803	1243	1086	87.3693
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.9291	98.9219	93.1120	72.4097	16792	183	16803	1243	1086	87.3693
jlack-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	95.5882	99.5406	91.9378	72.4044	650	3	650	57	55	96.4912
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9261	100.0000	99.8524	72.4033	1353	0	1353	2	0	0.0000
gduggal-bwavard	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	80.9251	78.3877	83.6323	72.4014	50506	13925	50171	9819	9240	94.1033
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.1130	99.2516	98.9748	72.3987	2122	16	2124	22	4	18.1818
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	72.3982	122	0	122	0	0
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	72.3982	122	0	122	0	0
eyeh-varpipe	SNP	tv	map_l125_m1_e0	hetalt	99.4872	100.0000	98.9796	72.3944	30	0	97	1	0	0.0000
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.8427	93.9232	97.8424	72.3914	4034	261	4036	89	6	6.7416
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	65.8532	55.5178	80.9170	72.3914	654	524	653	154	116	75.3247
jli-custom	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	94.3143	94.5890	94.0412	72.3901	909	52	868	55	49	89.0909
gduggal-bwafb	INDEL	I16_PLUS	map_siren	*	54.1375	38.3721	91.8919	72.3881	33	53	34	3	3	100.0000
ndellapenna-hhga	SNP	*	map_l150_m2_e0	homalt	99.6916	99.4786	99.9056	72.3853	11638	61	11638	11	10	90.9091
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3708	98.3432	98.3984	72.3852	3502	59	3502	57	45	78.9474
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3567	99.0991	99.6157	72.3838	1320	12	1296	5	3	60.0000
ciseli-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	88.5602	98.1043	80.7085	72.3823	1656	32	1686	403	136	33.7469
dgrover-gatk	SNP	*	map_l125_m1_e0	hetalt	98.3051	96.6667	100.0000	72.3810	29	1	29	0	0
dgrover-gatk	SNP	tv	map_l125_m1_e0	hetalt	98.3051	96.6667	100.0000	72.3810	29	1	29	0	0
jpowers-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	65.7303	76.4706	57.6355	72.3810	117	36	117	86	73	84.8837
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.2727	95.5357	99.0741	72.3785	107	5	107	1	1	100.0000
jlack-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.9618	99.7173	98.2178	72.3769	3527	10	3527	64	63	98.4375
gduggal-snapvard	SNP	tv	map_siren	het	94.6657	97.2841	92.1846	72.3745	27832	777	27719	2350	198	8.4255
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	93.0284	92.5690	93.4924	72.3704	872	70	862	60	55	91.6667
bgallagher-sentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6669	97.8687	99.4782	72.3688	15245	332	15252	80	64	80.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	94.4444	89.4737	100.0000	72.3684	17	2	21	0	0
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	65.6349	65.9236	65.3487	72.3679	828	428	909	482	71	14.7303
hfeng-pmm2	SNP	tv	map_l125_m1_e0	*	99.2768	99.4318	99.1223	72.3649	15925	91	15923	141	16	11.3475
jmaeng-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.3384	99.0709	97.6165	72.3626	5545	52	5529	135	121	89.6296
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	77.8216	78.3784	77.2727	72.3618	58	16	85	25	25	100.0000
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	94.4606	91.0112	98.1818	72.3618	162	16	162	3	3	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	94.4606	91.0112	98.1818	72.3618	162	16	162	3	3	100.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	50.2132	87.3684	35.2307	72.3584	581	84	588	1081	1065	98.5199
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	90.1510	90.4439	89.8599	72.3577	3199	338	3208	362	144	39.7790
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	47.6817	34.6405	76.4706	72.3577	53	100	52	16	16	100.0000

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