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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 881 882 883 884 885 886 887 888 889 ... 1720 1721 » 44201-44250 / 86044 show all
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	*	91.6667	84.6154	100.0000	72.5000	11	2	11	0	0
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.0819	98.1805	100.0000	72.5000	1349	25	1485	0	0
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.2973	94.7368	100.0000	72.5000	18	1	22	0	0
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	90.3030	95.8199	85.3868	72.4980	298	13	298	51	50	98.0392
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.8203	99.3835	98.2634	72.4925	30951	192	30951	547	35	6.3985
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.8203	99.3835	98.2634	72.4925	30951	192	30951	547	35	6.3985
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0605	98.9572	99.1641	72.4921	949	10	949	8	6	75.0000
ltrigg-rtg2	INDEL	I1_5	*	hetalt	98.3546	97.0076	99.7395	72.4903	10860	335	11105	29	29	100.0000
jpowers-varprowl	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	55.1985	59.1093	51.7730	72.4878	146	101	146	136	136	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.5639	99.8469	97.3134	72.4846	652	1	652	18	17	94.4444
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.4054	95.8637	98.9975	72.4828	394	17	395	4	4	100.0000
jpowers-varprowl	SNP	*	map_l100_m1_e0	het	97.3402	97.0590	97.6230	72.4758	44025	1334	44027	1072	263	24.5336
ndellapenna-hhga	SNP	tv	map_l150_m1_e0	het	98.5385	97.5525	99.5446	72.4747	6776	170	6776	31	13	41.9355
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	56.8463	56.2189	57.4879	72.4734	113	88	119	88	85	96.5909
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	81.4336	70.9302	95.5882	72.4696	61	25	65	3	3	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	95.5301	93.6306	97.5083	72.4674	1176	80	1174	30	1	3.3333
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.4518	90.7445	98.4749	72.4655	451	46	452	7	5	71.4286
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.2899	98.0823	98.4984	72.4641	2097	41	2099	32	22	68.7500
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	54.0397	38.7097	89.4737	72.4638	108	171	34	4	4	100.0000
gduggal-bwaplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	79.4326	66.6667	98.2456	72.4638	56	28	56	1	1	100.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5930	99.2808	99.9072	72.4630	5384	39	5384	5	5	100.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5930	99.2808	99.9072	72.4630	5384	39	5384	5	5	100.0000
gduggal-snapplat	SNP	*	map_siren	het	96.5899	96.2777	96.9043	72.4626	87604	3387	87710	2802	1309	46.7166
jlack-gatk	INDEL	D1_5	HG002complexvar	hetalt	93.7719	91.1243	96.5779	72.4607	1232	120	1270	45	42	93.3333
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	57.4446	41.4634	93.4708	72.4562	561	792	544	38	36	94.7368
ckim-isaac	SNP	*	map_siren	hetalt	72.4409	56.7901	100.0000	72.4551	46	35	46	0	0
ckim-isaac	SNP	tv	map_siren	hetalt	72.4409	56.7901	100.0000	72.4551	46	35	46	0	0
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	94.4606	91.0112	98.1818	72.4541	162	16	162	3	3	100.0000
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	75.2099	92.3698	63.4269	72.4538	1259	104	1266	730	77	10.5479
gduggal-bwafb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	94.8607	93.0351	96.7593	72.4507	5677	425	6509	218	163	74.7706
hfeng-pmm1	SNP	tv	map_l125_m0_e0	homalt	99.5050	99.5498	99.4602	72.4501	2211	10	2211	12	4	33.3333
gduggal-bwaplat	INDEL	D16_PLUS	HG002complexvar	*	76.5914	63.4206	96.6667	72.4490	1042	601	1044	36	23	63.8889
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	80.9816	80.4878	81.4815	72.4490	66	16	66	15	14	93.3333
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.2336	99.4427	99.0254	72.4471	28552	160	28552	281	26	9.2527
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.2336	99.4427	99.0254	72.4471	28552	160	28552	281	26	9.2527
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.1200	97.1631	99.0958	72.4464	548	16	548	5	5	100.0000
jpowers-varprowl	SNP	ti	map_l125_m0_e0	homalt	98.7168	97.6397	99.8179	72.4456	4385	106	4385	8	6	75.0000
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.5056	92.0139	89.0459	72.4440	265	23	252	31	15	48.3871
ckim-isaac	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	85.1218	85.4985	84.7484	72.4437	566	96	539	97	47	48.4536
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	79.8601	67.5701	97.6148	72.4420	2169	1041	2169	53	50	94.3396
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3176	99.3243	99.3109	72.4414	1323	9	1297	9	7	77.7778
anovak-vg	SNP	ti	map_l150_m2_e0	homalt	88.3955	79.6350	99.3218	72.4413	6065	1551	6004	41	36	87.8049
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	het	43.2314	69.2308	31.4286	72.4409	9	4	11	24	11	45.8333
gduggal-bwavard	INDEL	I1_5	map_l100_m1_e0	homalt	97.3420	95.5598	99.1919	72.4388	495	23	491	4	2	50.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.0411	92.8475	85.5346	72.4341	688	53	680	115	105	91.3043
anovak-vg	SNP	ti	map_l150_m2_e1	homalt	88.4680	79.7478	99.3294	72.4334	6135	1558	6073	41	36	87.8049
dgrover-gatk	SNP	ti	map_l125_m1_e0	*	99.3758	99.3284	99.4233	72.4326	29138	197	29134	169	41	24.2604
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	87.4816	88.0131	86.9565	72.4315	536	73	560	84	71	84.5238
ghariani-varprowl	SNP	ti	map_l100_m1_e0	het	98.1681	99.0582	97.2939	72.4309	29660	282	29662	825	157	19.0303
ckim-dragen	SNP	ti	map_l125_m1_e0	*	98.4145	99.1171	97.7219	72.4285	29076	259	29083	678	79	11.6519

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