PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 880 881 882 883 884 885 886 887 888 ... 1720 1721 » 44151-44200 / 86044 show all
hfeng-pmm2	SNP	tv	map_l125_m0_e0	homalt	99.5050	99.5498	99.4602	72.5691	2211	10	2211	12	4	33.3333
gduggal-snapplat	INDEL	*	HG002compoundhet	*	42.2745	36.5854	50.0587	72.5688	10961	18999	11522	11495	5404	47.0117
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.9917	98.3416	99.6503	72.5659	593	10	570	2	2	100.0000
gduggal-snapvard	INDEL	C16_PLUS	HG002complexvar	*	0.0000	0.0000	35.5556	72.5610	0	0	16	29	6	20.6897
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	93.3333	93.3333	93.3333	72.5610	42	3	42	3	2	66.6667
eyeh-varpipe	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	92.2240	99.4840	85.9515	72.5594	21786	113	22362	3655	3631	99.3434
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.5965	99.6454	97.5694	72.5584	562	2	562	14	13	92.8571
ckim-isaac	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	75.9096	68.0162	85.8757	72.5581	168	79	152	25	16	64.0000
rpoplin-dv42	INDEL	D6_15	map_l100_m1_e0	hetalt	92.9134	86.7647	100.0000	72.5581	59	9	59	0	0
gduggal-bwaplat	INDEL	I16_PLUS	HG002complexvar	het	60.5561	44.2105	96.0784	72.5561	294	371	294	12	5	41.6667
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.9022	98.6444	99.1614	72.5547	946	13	946	8	6	75.0000
ckim-dragen	INDEL	D16_PLUS	*	*	97.1268	97.5531	96.7043	72.5515	6618	166	6602	225	138	61.3333
ckim-gatk	INDEL	D16_PLUS	HG002compoundhet	homalt	44.4444	100.0000	28.5714	72.5490	8	0	8	20	20	100.0000
asubramanian-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	72.5490	0	0	0	14	0	0.0000
raldana-dualsentieon	SNP	*	map_l125_m2_e1	hetalt	96.5517	93.3333	100.0000	72.5490	28	2	28	0	0
raldana-dualsentieon	SNP	tv	map_l125_m2_e1	hetalt	96.5517	93.3333	100.0000	72.5490	28	2	28	0	0
jli-custom	SNP	*	map_l100_m1_e0	hetalt	98.7952	100.0000	97.6190	72.5490	41	0	41	1	1	100.0000
jli-custom	SNP	tv	map_l100_m1_e0	hetalt	98.7952	100.0000	97.6190	72.5490	41	0	41	1	1	100.0000
ckim-vqsr	INDEL	D16_PLUS	HG002compoundhet	homalt	44.4444	100.0000	28.5714	72.5490	8	0	8	20	20	100.0000
gduggal-bwafb	SNP	tv	map_l100_m2_e0	het	98.4689	99.0556	97.8891	72.5475	15628	149	15628	337	48	14.2433
gduggal-snapplat	SNP	*	map_l150_m1_e0	homalt	92.6495	86.3745	99.9076	72.5432	9737	1536	9728	9	9	100.0000
gduggal-bwaplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	80.9828	69.1181	97.7650	72.5426	12556	5610	12554	287	244	85.0174
gduggal-bwaplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	80.9828	69.1181	97.7650	72.5426	12556	5610	12554	287	244	85.0174
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	88.5028	99.3917	79.7641	72.5419	2941	18	2976	755	16	2.1192
gduggal-bwafb	SNP	*	map_l125_m0_e0	homalt	99.3333	98.7783	99.8945	72.5403	6630	82	6630	7	6	85.7143
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.7431	84.7458	100.0000	72.5389	50	9	53	0	0
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	72.5387	2409	8	2409	1	1	100.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	78.3674	76.9841	79.8013	72.5330	485	145	482	122	85	69.6721
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1639	98.4142	99.9251	72.5328	5337	86	5337	4	4	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1639	98.4142	99.9251	72.5328	5337	86	5337	4	4	100.0000
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	60.9623	54.4271	69.2810	72.5314	209	175	212	94	51	54.2553
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.0291	98.0769	100.0000	72.5275	51	1	50	0	0
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	86.2768	77.0823	97.9619	72.5253	1490	443	1490	31	29	93.5484
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	86.6995	85.5368	87.8943	72.5250	3099	524	3093	426	415	97.4178
jlack-gatk	SNP	tv	map_siren	het	95.9855	99.5106	92.7015	72.5215	28469	140	28464	2241	108	4.8193
raldana-dualsentieon	SNP	*	map_l125_m1_e0	het	98.7746	98.9539	98.5959	72.5206	28095	297	28089	400	4	1.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	77.1368	72.0532	82.9923	72.5173	11223	4353	45225	9268	7975	86.0488
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3113	99.2548	99.3680	72.5172	3596	27	3616	23	5	21.7391
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	81.9563	92.6437	73.4797	72.5162	403	32	435	157	14	8.9172
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.1367	94.4039	95.8810	72.5157	388	23	419	18	18	100.0000
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	53.8900	46.6238	63.8393	72.5153	145	166	143	81	74	91.3580
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6218	99.4099	99.8345	72.5123	5391	32	5430	9	0	0.0000
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6218	99.4099	99.8345	72.5123	5391	32	5430	9	0	0.0000
ghariani-varprowl	INDEL	I1_5	HG002compoundhet	het	21.0205	76.7059	12.1791	72.5111	652	198	721	5199	5126	98.5959
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2418	98.9224	99.5633	72.5090	459	5	456	2	0	0.0000
ckim-isaac	SNP	tv	map_l150_m2_e1	homalt	60.1387	43.0092	99.9438	72.5081	1778	2356	1778	1	1	100.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.9735	92.2961	93.6609	72.5054	611	51	591	40	14	35.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	90.4762	82.6087	100.0000	72.5000	19	4	22	0	0
egarrison-hhga	INDEL	I16_PLUS	func_cds	*	95.6522	91.6667	100.0000	72.5000	11	1	11	0	0
ckim-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	90.4762	82.6087	100.0000	72.5000	19	4	22	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge