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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 879 880 881 882 883 884 885 886 887 ... 1720 1721 » 44101-44150 / 86044 show all
gduggal-bwafb	SNP	ti	map_l100_m0_e0	het	98.5173	98.5983	98.4365	72.6281	13787	196	13788	219	63	28.7671
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.9022	93.2367	98.7245	72.6257	386	28	387	5	4	80.0000
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3660	98.2626	98.4696	72.6251	92808	1641	92717	1441	1058	73.4212
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.3289	98.9813	95.7307	72.6231	1166	12	1166	52	52	100.0000
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	94.4196	95.2703	93.5841	72.6227	423	21	423	29	20	68.9655
gduggal-snapplat	INDEL	D1_5	HG002compoundhet	*	46.3272	44.0131	48.8981	72.6225	5385	6850	5880	6145	3920	63.7917
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	93.5488	98.1667	89.3458	72.6223	2945	55	3346	399	43	10.7769
bgallagher-sentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2834	99.8869	98.6872	72.6216	3533	4	3533	47	47	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.6238	99.4640	97.7977	72.6194	5567	30	5551	125	111	88.8000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	72.6190	19	0	23	0	0
ltrigg-rtg1	SNP	ti	map_l150_m2_e0	homalt	99.7107	99.5667	99.8552	72.6188	7583	33	7584	11	11	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2414	99.9435	98.5491	72.6182	3535	2	3532	52	52	100.0000
gduggal-snapfb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	89.1402	99.2630	80.8911	72.6164	27474	204	27579	6515	214	3.2847
ciseli-custom	SNP	ti	map_l150_m2_e0	homalt	87.0824	85.6618	88.5509	72.6120	6524	1092	6520	843	689	81.7319
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9261	99.9261	99.9261	72.6113	1352	1	1352	1	0	0.0000
ltrigg-rtg1	SNP	tv	map_l150_m2_e1	homalt	99.8426	99.7339	99.9516	72.6103	4123	11	4127	2	2	100.0000
ltrigg-rtg1	SNP	tv	map_l150_m2_e0	homalt	99.8529	99.7551	99.9509	72.6094	4073	10	4074	2	2	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6173	97.7724	99.4771	72.6068	15230	347	15218	80	60	75.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.0254	98.4733	99.5838	72.6059	1677	26	1675	7	2	28.5714
rpoplin-dv42	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6271	99.4292	99.8258	72.6049	21774	125	21771	38	37	97.3684
gduggal-bwafb	SNP	tv	map_l100_m2_e1	het	98.4812	99.0651	97.9041	72.6029	15789	149	15789	338	49	14.4970
gduggal-bwaplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	76.0853	63.1134	95.7692	72.6027	746	436	747	33	30	90.9091
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	77.9143	85.8268	71.3376	72.6003	109	18	112	45	44	97.7778
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.3958	98.0100	98.7847	72.5975	591	12	569	7	3	42.8571
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2409	98.7069	99.7807	72.5962	458	6	455	1	0	0.0000
egarrison-hhga	SNP	tv	map_l150_m1_e0	*	99.2818	98.8087	99.7594	72.5943	10782	130	10782	26	12	46.1538
gduggal-bwaplat	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	89.4671	81.5166	99.1361	72.5927	1376	312	1377	12	10	83.3333
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	0.0000	0.0000	37.8378	72.5926	0	108	14	23	11	47.8261
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	44.8723	35.0206	62.4365	72.5902	2214	4108	2214	1332	1288	96.6967
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	44.8723	35.0206	62.4365	72.5902	2214	4108	2214	1332	1288	96.6967
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	97.2255	97.5000	96.9526	72.5894	2925	75	2927	92	63	68.4783
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.3846	95.4459	99.4036	72.5886	503	24	500	3	3	100.0000
jmaeng-gatk	INDEL	D1_5	HG002complexvar	hetalt	92.2064	88.1657	96.6354	72.5869	1192	160	1235	43	43	100.0000
gduggal-snapplat	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	87.3659	78.3797	98.6795	72.5835	7914	2183	7921	106	54	50.9434
gduggal-bwaplat	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	88.1535	79.4790	98.9534	72.5834	2746	709	2742	29	25	86.2069
gduggal-bwavard	SNP	tv	map_siren	het	95.7305	97.7804	93.7647	72.5806	27974	635	27865	1853	145	7.8252
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	64.9606	65.2174	64.7059	72.5806	45	24	22	12	5	41.6667
ndellapenna-hhga	INDEL	D16_PLUS	map_l100_m1_e0	hetalt	75.1105	65.3846	88.2353	72.5806	17	9	15	2	0	0.0000
ndellapenna-hhga	INDEL	D16_PLUS	map_l100_m2_e0	hetalt	75.1105	65.3846	88.2353	72.5806	17	9	15	2	0	0.0000
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	88.7013	84.8315	92.9412	72.5806	151	27	158	12	4	33.3333
ltrigg-rtg2	INDEL	D16_PLUS	map_l100_m1_e0	hetalt	81.8182	69.2308	100.0000	72.5806	18	8	17	0	0
ltrigg-rtg2	INDEL	D16_PLUS	map_l100_m2_e0	hetalt	81.8182	69.2308	100.0000	72.5806	18	8	17	0	0
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	*	94.1091	95.0450	93.1915	72.5788	211	11	219	16	4	25.0000
ghariani-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	86.9441	95.3611	79.8924	72.5785	1624	79	1633	411	364	88.5645
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.2110	98.7855	99.6402	72.5769	3579	44	3600	13	3	23.0769
ckim-isaac	SNP	tv	map_l150_m2_e0	homalt	59.9931	42.8606	99.9429	72.5764	1750	2333	1750	1	1	100.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	97.4626	97.6139	97.3118	72.5745	900	22	905	25	15	60.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.0294	99.2360	96.8517	72.5744	1169	9	1169	38	38	100.0000
gduggal-bwaplat	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	86.8721	77.5325	98.7699	72.5739	1370	397	1365	17	15	88.2353
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.7277	98.8115	98.6441	72.5709	1164	14	1164	16	16	100.0000

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