PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 877 878 879 880 881 882 883 884 885 ... 1720 1721 » 44001-44050 / 86044 show all
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	80.2442	67.8279	98.2249	72.7639	331	157	332	6	4	66.6667
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3173	99.3243	99.3103	72.7614	1323	9	1296	9	7	77.7778
rpoplin-dv42	SNP	ti	map_l125_m0_e0	*	98.9475	98.7149	99.1811	72.7585	12598	164	12596	104	70	67.3077
ckim-isaac	INDEL	*	map_siren	homalt	82.0615	69.8682	99.4105	72.7551	1855	800	1855	11	7	63.6364
ckim-dragen	SNP	tv	map_l100_m0_e0	*	98.2217	98.8903	97.5621	72.7546	10961	123	10965	274	31	11.3139
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5070	99.8586	99.1578	72.7530	3532	5	3532	30	30	100.0000
gduggal-bwaplat	SNP	tv	map_l100_m1_e0	homalt	73.0094	57.4920	100.0000	72.7511	5199	3844	5198	0	0
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.6957	98.6957	98.6957	72.7488	227	3	227	3	2	66.6667
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.8715	98.1383	99.6157	72.7478	15287	290	15293	59	49	83.0508
mlin-fermikit	SNP	*	map_l250_m1_e0	homalt	51.7475	41.7783	67.9657	72.7453	1029	1434	1029	485	445	91.7526
astatham-gatk	SNP	*	map_l100_m0_e0	*	92.7245	86.6569	99.7057	72.7426	28459	4382	28455	84	35	41.6667
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5071	99.8869	99.1302	72.7419	3533	4	3533	31	31	100.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7364	1884	2	1884	7	5	71.4286
gduggal-bwaplat	SNP	ti	map_siren	het	92.8447	87.2527	99.2026	72.7353	54430	7952	54492	438	111	25.3425
dgrover-gatk	SNP	*	map_l125_m1_e0	*	99.3215	99.3139	99.3291	72.7346	45016	311	45010	304	68	22.3684
ndellapenna-hhga	SNP	*	map_l150_m0_e0	homalt	99.5215	99.1930	99.8523	72.7346	4056	33	4056	6	5	83.3333
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.5555	98.1735	98.9404	72.7338	645	12	747	8	3	37.5000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0878	99.0624	99.1133	72.7315	30851	292	30851	276	26	9.4203
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0878	99.0624	99.1133	72.7315	30851	292	30851	276	26	9.4203
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	93.8778	96.0437	91.8075	72.7305	704	29	706	63	44	69.8413
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	76.8360	71.2348	83.3933	72.7285	1523	615	1622	323	129	39.9381
astatham-gatk	INDEL	D6_15	map_l100_m1_e0	hetalt	96.1832	92.6471	100.0000	72.7273	63	5	63	0	0
qzeng-custom	INDEL	C16_PLUS	map_l100_m1_e0	het		0.0000	0.0000	72.7273	0	0	0	21	0	0.0000
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	91.6667	91.6667	91.6667	72.7273	33	3	33	3	3	100.0000
ltrigg-rtg1	INDEL	D16_PLUS	map_l100_m1_e0	hetalt	89.3617	80.7692	100.0000	72.7273	21	5	18	0	0
ltrigg-rtg1	INDEL	D16_PLUS	map_l100_m2_e0	hetalt	89.3617	80.7692	100.0000	72.7273	21	5	18	0	0
ltrigg-rtg1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	94.3396	92.5926	96.1538	72.7273	75	6	75	3	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	72.7273	2	0	3	0	0
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	72.7273	2	0	3	0	0
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	72.7273	2	0	3	0	0
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	72.7273	2	0	3	0	0
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	9.8039	5.1546	100.0000	72.7273	5	92	6	0	0
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	10.5263	100.0000	5.5556	72.7273	1	0	1	17	0	0.0000
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	11.1111	8.3333	16.6667	72.7273	2	22	1	5	2	40.0000
eyeh-varpipe	INDEL	*	func_cds	hetalt	69.7674	60.0000	83.3333	72.7273	3	2	5	1	1	100.0000
ckim-isaac	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	71.4286	62.5000	83.3333	72.7273	5	3	5	1	1	100.0000
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	67.5127	53.8462	90.4762	72.7273	21	18	19	2	2	100.0000
jli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	85.7143	75.0000	100.0000	72.7273	3	1	3	0	0
ciseli-custom	INDEL	C1_5	func_cds	homalt		0.0000	0.0000	72.7273	0	0	0	3	0	0.0000
hfeng-pmm2	SNP	ti	map_l100_m0_e0	het	99.0752	99.2276	98.9232	72.7259	13875	108	13872	151	12	7.9470
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4789	99.8586	99.1021	72.7252	3532	5	3532	32	32	100.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7247	1884	2	1884	7	5	71.4286
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7247	1884	2	1884	7	5	71.4286
jli-custom	SNP	tv	map_l150_m1_e0	het	98.7145	98.4020	99.0291	72.7212	6835	111	6834	67	19	28.3582
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	56.8863	58.4740	55.3825	72.7189	797	566	818	659	497	75.4173
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	97.3131	96.7575	97.8752	72.7174	1492	50	1474	32	29	90.6250
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.6230	99.8728	97.4042	72.7150	785	1	788	21	13	61.9048
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.1413	97.5124	98.7784	72.7143	588	15	566	7	4	57.1429
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.8571	97.7401	100.0000	72.7129	173	4	173	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.0725	92.1348	98.2036	72.7124	164	14	164	3	3	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge