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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 876 877 878 879 880 881 882 883 884 ... 1720 1721 » 43951-44000 / 86044 show all
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	het	92.0000	85.1852	100.0000	72.8261	23	4	25	0	0
jmaeng-gatk	SNP	ti	map_l125_m1_e0	homalt	77.2828	62.9878	99.9713	72.8260	6957	4088	6957	2	2	100.0000
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.4108	95.7889	99.0885	72.8253	1888	83	1848	17	10	58.8235
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.4108	95.7889	99.0885	72.8253	1888	83	1848	17	10	58.8235
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.0188	98.3264	97.7131	72.8249	470	8	470	11	9	81.8182
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	92.5151	89.5327	95.7031	72.8238	479	56	490	22	20	90.9091
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.3692	98.9653	99.7765	72.8230	1339	14	1339	3	1	33.3333
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.3963	97.8441	98.9547	72.8220	590	13	568	6	2	33.3333
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.4827	95.6357	99.4024	72.8208	504	23	499	3	3	100.0000
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	71.0348	99.0643	55.3687	72.8200	847	8	856	690	5	0.7246
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.5075	99.0450	97.9757	72.8173	726	7	726	15	12	80.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	94.4606	91.0112	98.1818	72.8171	162	16	162	3	2	66.6667
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5071	99.8869	99.1302	72.8167	3533	4	3533	31	31	100.0000
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	94.9922	92.1495	98.0159	72.8155	493	42	494	10	10	100.0000
hfeng-pmm3	SNP	ti	map_siren	hetalt	99.1150	98.2456	100.0000	72.8155	56	1	56	0	0
mlin-fermikit	INDEL	D6_15	map_siren	hetalt	71.7865	56.5657	98.2143	72.8155	56	43	55	1	0	0.0000
ciseli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	83.2820	90.9950	76.7743	72.8145	19927	1972	19807	5992	5413	90.3371
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.2828	95.8599	98.7486	72.8116	903	39	868	11	7	63.6364
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3833	100.0000	98.7741	72.8095	564	0	564	7	7	100.0000
jli-custom	SNP	ti	map_l100_m2_e0	hetalt	98.3607	100.0000	96.7742	72.8070	30	0	30	1	1	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2798	99.1742	99.3856	72.8070	1321	11	1294	8	6	75.0000
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	86.9083	88.9474	84.9606	72.8067	1183	147	1401	248	226	91.1290
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.1647	97.6017	98.7342	72.8055	936	23	936	12	8	66.6667
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	62.4468	81.4917	50.6173	72.8005	295	67	205	200	199	99.5000
gduggal-bwaplat	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	83.8527	73.6525	97.3325	72.7994	11355	4062	11348	311	304	97.7492
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	71.3996	88.8382	59.6839	72.7955	1751	220	1775	1199	1169	97.4979
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	71.3996	88.8382	59.6839	72.7955	1751	220	1775	1199	1169	97.4979
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	85.8712	78.6982	94.4828	72.7955	133	36	137	8	8	100.0000
eyeh-varpipe	SNP	tv	map_siren	hetalt	98.7001	98.7654	98.6348	72.7948	80	1	289	4	4	100.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	49.8749	48.6428	51.1711	72.7940	896	946	1005	959	462	48.1752
jpowers-varprowl	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	83.7981	89.6100	78.6942	72.7931	5468	634	5496	1488	1452	97.5806
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.6077	95.3271	100.0000	72.7898	510	25	514	0	0
ltrigg-rtg2	SNP	tv	map_l150_m0_e0	homalt	99.6224	99.3223	99.9242	72.7891	1319	9	1319	1	0	0.0000
bgallagher-sentieon	SNP	*	map_l100_m2_e0	hetalt	97.5610	95.2381	100.0000	72.7891	40	2	40	0	0
bgallagher-sentieon	SNP	tv	map_l100_m2_e0	hetalt	97.5610	95.2381	100.0000	72.7891	40	2	40	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.7881	564	0	564	5	5	100.0000
gduggal-snapfb	INDEL	I1_5	HG002compoundhet	hetalt	85.0180	77.5969	94.0087	72.7861	8673	2504	4111	262	204	77.8626
gduggal-snapfb	SNP	*	map_l125_m1_e0	*	96.8640	96.8959	96.8321	72.7854	43920	1407	43924	1437	620	43.1454
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	78.8448	66.1017	97.6744	72.7848	39	20	42	1	1	100.0000
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	96.4696	97.9853	95.0000	72.7838	535	11	665	35	35	100.0000
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	78.6552	86.4019	72.1833	72.7812	5547	873	5561	2143	2067	96.4536
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	78.6552	86.4019	72.1833	72.7812	5547	873	5561	2143	2067	96.4536
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	75.8784	82.4324	70.2899	72.7811	122	26	97	41	41	100.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	93.8698	91.3024	96.5857	72.7788	6078	579	6167	218	97	44.4954
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.4177	98.8829	99.9582	72.7717	2390	27	2394	1	1	100.0000
rpoplin-dv42	INDEL	D16_PLUS	HG002complexvar	homalt	98.6111	98.2699	98.9547	72.7704	284	5	284	3	2	66.6667
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7091	99.9470	99.4723	72.7691	1885	1	1885	10	8	80.0000
bgallagher-sentieon	INDEL	D6_15	map_l100_m2_e0	hetalt	95.4545	92.6471	98.4375	72.7660	63	5	63	1	0	0.0000
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	78.2135	67.4157	93.1298	72.7651	120	58	122	9	3	33.3333
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	92.9210	92.2462	93.6058	72.7642	1963	165	1947	133	117	87.9699

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