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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 875 876 877 878 879 880 881 882 883 ... 1720 1721 » 43901-43950 / 86044 show all
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	72.8814	16	0	16	0	0
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	93.4673	87.7358	100.0000	72.8814	93	13	96	0	0
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	72.8814	16	0	16	0	0
dgrover-gatk	INDEL	D6_15	map_l100_m1_e0	hetalt	95.4545	92.6471	98.4375	72.8814	63	5	63	1	0	0.0000
egarrison-hhga	INDEL	D16_PLUS	map_l100_m2_e1	hetalt	65.2174	50.0000	93.7500	72.8814	15	15	15	1	0	0.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0078	98.8530	99.1632	72.8794	948	11	948	8	6	75.0000
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.0742	99.2047	98.9440	72.8770	1871	15	1874	20	6	30.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3559	99.2492	99.4628	72.8768	1322	10	1296	7	5	71.4286
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.4700	99.8227	99.1197	72.8749	563	1	563	5	5	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.6869	99.5614	95.8817	72.8731	908	4	908	39	38	97.4359
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9261	100.0000	99.8524	72.8729	1353	0	1353	2	1	50.0000
gduggal-bwaplat	INDEL	D16_PLUS	*	*	82.9287	71.7129	98.3034	72.8727	4865	1919	4867	84	65	77.3810
jpowers-varprowl	SNP	ti	map_l100_m2_e0	het	97.5401	97.0479	98.0373	72.8725	29718	904	29720	595	164	27.5630
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	61.4597	44.8804	97.4636	72.8689	2665	3273	4957	129	121	93.7984
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2509	96.9956	99.5391	72.8687	15109	468	15117	70	47	67.1429
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	55.1724	41.2831	83.1461	72.8659	296	421	296	60	58	96.6667
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	100.0000	100.0000	100.0000	72.8659	89	0	89	0	0
gduggal-snapvard	SNP	ti	map_l100_m1_e0	*	95.0911	96.2467	93.9630	72.8656	46132	1799	45682	2935	278	9.4719
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7097	99.4621	99.9584	72.8647	2404	13	2404	1	1	100.0000
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6285	99.8409	99.4171	72.8645	1883	3	1876	11	8	72.7273
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	75.6798	94.7674	62.9921	72.8632	163	9	160	94	2	2.1277
rpoplin-dv42	INDEL	D6_15	map_siren	hetalt	95.2880	91.9192	98.9130	72.8614	91	8	91	1	1	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4228	99.8304	99.0185	72.8574	3531	6	3531	35	34	97.1429
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	52.0278	40.2098	73.6842	72.8571	115	171	14	5	5	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.3923	96.8354	100.0000	72.8559	306	10	307	0	0
ckim-isaac	SNP	*	map_l125_m2_e1	*	73.7959	58.5590	99.7510	72.8548	27641	19561	27643	69	17	24.6377
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	72.8523	2407	10	2407	1	1	100.0000
raldana-dualsentieon	SNP	ti	map_l125_m0_e0	*	98.7816	98.7933	98.7699	72.8522	12608	154	12606	157	6	3.8217
ckim-dragen	SNP	*	map_l125_m1_e0	*	98.3997	99.0866	97.7222	72.8507	44913	414	44919	1047	117	11.1748
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.4853	98.2646	98.7069	72.8496	906	16	916	12	1	8.3333
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	88.8240	95.3174	83.1589	72.8494	916	45	874	177	168	94.9153
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.1797	98.9154	97.4549	72.8477	912	10	919	24	3	12.5000
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	96.4706	93.1818	100.0000	72.8477	41	3	41	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	96.4706	93.1818	100.0000	72.8477	41	3	41	0	0
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.3979	97.1519	99.6764	72.8471	307	9	308	1	1	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.3979	97.1519	99.6764	72.8471	307	9	308	1	1	100.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.9650	99.5196	98.4165	72.8445	1243	6	1243	20	16	80.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.9650	99.5196	98.4165	72.8445	1243	6	1243	20	16	80.0000
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	76.4847	93.7931	64.5692	72.8444	408	27	667	366	206	56.2842
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	46.1868	42.3753	50.7516	72.8442	6194	8423	7833	7601	1738	22.8654
ckim-isaac	SNP	*	map_l125_m2_e0	*	73.7324	58.4787	99.7518	72.8403	27323	19400	27325	68	16	23.5294
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.8401	564	0	564	5	5	100.0000
ghariani-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	94.5086	98.3261	90.9764	72.8370	1351	23	1351	134	68	50.7463
cchapple-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5991	99.7991	99.4000	72.8360	21855	44	21701	131	126	96.1832
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	75.1699	81.7568	69.5652	72.8346	121	27	96	42	42	100.0000
hfeng-pmm3	INDEL	I16_PLUS	*	het	98.6061	97.7557	99.4715	72.8336	2657	61	2635	14	3	21.4286
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.8800	97.7848	100.0000	72.8309	309	7	310	0	0
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.7220	97.5815	99.8894	72.8284	928	23	903	1	1	100.0000
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	69.0860	69.8980	68.2927	72.8277	1507	649	1512	702	277	39.4587
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	63.1287	83.7209	50.6667	72.8261	36	7	38	37	25	67.5676

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