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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 874 875 876 877 878 879 880 881 882 ... 1720 1721 » 43851-43900 / 86044 show all
jlack-gatk	SNP	ti	map_l100_m1_e0	*	97.4794	99.0945	95.9161	72.9428	47497	434	47490	2022	193	9.5450
gduggal-snapvard	INDEL	D16_PLUS	HG002complexvar	*	9.5470	5.2952	48.4536	72.9428	87	1556	94	100	53	53.0000
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1128	99.3482	98.8786	72.9414	30940	203	30949	351	41	11.6809
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1128	99.3482	98.8786	72.9414	30940	203	30949	351	41	11.6809
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.4810	98.0100	98.9565	72.9412	591	12	569	6	2	33.3333
ckim-gatk	INDEL	I16_PLUS	HG002compoundhet	homalt	8.3333	100.0000	4.3478	72.9412	3	0	3	66	66	100.0000
ckim-vqsr	INDEL	I16_PLUS	HG002compoundhet	homalt	8.3333	100.0000	4.3478	72.9412	3	0	3	66	66	100.0000
astatham-gatk	INDEL	D1_5	HG002complexvar	hetalt	95.3253	93.9349	96.7576	72.9412	1270	82	1313	44	43	97.7273
gduggal-snapfb	SNP	ti	map_l125_m0_e0	het	95.0321	95.8369	94.2408	72.9383	7919	344	7920	484	255	52.6860
rpoplin-dv42	SNP	*	map_l125_m0_e0	*	98.7955	98.5969	98.9950	72.9367	19113	272	19110	194	120	61.8557
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6313	99.3324	99.9319	72.9366	1488	10	1468	1	1	100.0000
jli-custom	SNP	*	map_l150_m1_e0	het	98.8306	98.4521	99.2121	72.9358	19017	299	19014	151	48	31.7881
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	0.0000	0.0000	36.1111	72.9323	0	66	13	23	11	47.8261
ciseli-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	85.1821	88.1350	82.4206	72.9298	5378	724	5448	1162	656	56.4544
dgrover-gatk	SNP	tv	map_l100_m2_e0	het	99.3042	99.5246	99.0848	72.9235	15702	75	15698	145	24	16.5517
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.1748	95.9660	98.4145	72.9224	904	38	869	14	8	57.1429
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5604	97.4488	99.6975	72.9214	8900	233	8900	27	5	18.5185
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5604	97.4488	99.6975	72.9214	8900	233	8900	27	5	18.5185
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.9022	98.6444	99.1614	72.9208	946	13	946	8	6	75.0000
qzeng-custom	SNP	ti	map_l150_m2_e0	homalt	79.9782	66.9643	99.2706	72.9194	5100	2516	5036	37	37	100.0000
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	96.7961	98.2976	95.3398	72.9184	9527	165	9554	467	126	26.9807
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.9177	564	0	564	5	5	100.0000
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	91.8726	90.2567	93.5475	72.9167	3270	353	3320	229	219	95.6332
jlack-gatk	INDEL	D6_15	map_l100_m2_e1	hetalt	92.7536	87.6712	98.4615	72.9167	64	9	64	1	0	0.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5394	97.9595	99.1262	72.9162	6289	131	6239	55	36	65.4545
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5394	97.9595	99.1262	72.9162	6289	131	6239	55	36	65.4545
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	97.3288	97.1175	97.5410	72.9162	1314	39	1309	33	32	96.9697
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.3384	99.1260	97.5632	72.9162	2155	19	2162	54	14	25.9259
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2521	96.8864	99.6568	72.9143	15092	485	15100	52	45	86.5385
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2047	98.8739	99.5378	72.9132	1317	15	1292	6	4	66.6667
raldana-dualsentieon	SNP	tv	map_l125_m1_e0	het	98.8615	99.0618	98.6621	72.9114	10031	95	10029	136	1	0.7353
qzeng-custom	SNP	ti	map_l150_m2_e1	homalt	80.1365	67.1910	99.2610	72.9055	5169	2524	5104	38	38	100.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.9263	98.3656	99.4933	72.9052	30634	509	30634	156	20	12.8205
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.9263	98.3656	99.4933	72.9052	30634	509	30634	156	20	12.8205
gduggal-bwafb	SNP	*	map_l150_m1_e0	homalt	99.3896	98.9444	99.8389	72.9039	11154	119	11154	18	11	61.1111
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	86.7340	86.1272	87.3494	72.8980	298	48	290	42	40	95.2381
gduggal-bwafb	SNP	tv	map_l125_m1_e0	*	98.6420	98.8699	98.4152	72.8937	15835	181	15835	255	50	19.6078
jpowers-varprowl	SNP	ti	map_l100_m2_e1	het	97.5492	97.0640	98.0394	72.8908	30051	909	30053	601	165	27.4542
raldana-dualsentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0349	98.5054	99.5702	72.8907	63468	963	63480	274	249	90.8759
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	94.8869	95.0176	94.7566	72.8903	4596	241	4554	252	104	41.2698
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.9828	98.1401	97.8261	72.8896	1583	30	1530	34	24	70.5882
ndellapenna-hhga	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.3782	98.4839	98.2727	72.8894	21567	332	21563	379	204	53.8259
jlack-gatk	INDEL	D6_15	map_l100_m2_e0	hetalt	93.0233	88.2353	98.3607	72.8889	60	8	60	1	0	0.0000
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	95.3327	99.7921	91.2548	72.8866	480	1	480	46	1	2.1739
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.3236	95.6938	99.0099	72.8859	200	9	200	2	2	100.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	52.6126	49.5308	56.1033	72.8835	475	484	478	374	353	94.3850
ckim-dragen	SNP	tv	map_l150_m0_e0	homalt	99.2838	99.1717	99.3962	72.8817	1317	11	1317	8	6	75.0000
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	22.8571	36.3636	16.6667	72.8814	8	14	8	40	35	87.5000
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	*	78.0488	64.0000	100.0000	72.8814	16	9	16	0	0
eyeh-varpipe	INDEL	I16_PLUS	map_l100_m2_e0	*	35.9447	23.0769	81.2500	72.8814	6	20	13	3	3	100.0000

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