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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 873 874 875 876 877 878 879 880 881 ... 1720 1721 » 43801-43850 / 86044 show all
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3136	99.0921	99.5361	73.0198	1528	14	1502	7	5	71.4286
anovak-vg	INDEL	C6_15	HG002compoundhet	*	0.0000	0.0000	8.8235	73.0159	0	0	3	31	4	12.9032
rpoplin-dv42	INDEL	I16_PLUS	map_l100_m1_e0	het	91.4286	88.8889	94.1176	73.0159	16	2	16	1	0	0.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.3114	97.6783	98.9529	73.0099	589	14	567	6	2	33.3333
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	85.2572	77.2727	95.0820	73.0088	102	30	116	6	4	66.6667
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	73.0075	2407	10	2407	1	1	100.0000
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	91.8769	85.4651	99.3289	73.0072	147	25	148	1	0	0.0000
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	86.3078	82.7751	90.1554	73.0070	173	36	174	19	12	63.1579
ndellapenna-hhga	INDEL	D6_15	map_l100_m1_e0	hetalt	76.7322	67.6471	88.6364	73.0061	46	22	39	5	2	40.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8524	100.0000	99.7052	73.0058	1353	0	1353	4	1	25.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m1_e0	het	97.0745	94.7064	99.5641	73.0054	1145	64	1142	5	0	0.0000
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	66.1849	94.2197	51.0078	73.0013	326	20	329	316	307	97.1519
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.9201	99.5652	98.2833	73.0012	229	1	229	4	4	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	97.8552	97.7169	97.9938	73.0000	642	15	635	13	12	92.3077
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.7613	94.2669	95.2609	72.9999	2006	122	1990	99	89	89.8990
bgallagher-sentieon	SNP	*	map_l125_m2_e1	*	99.2798	99.4555	99.1048	72.9953	46945	257	46939	424	70	16.5094
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	68.8525	87.5000	56.7568	72.9927	21	3	21	16	15	93.7500
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	92.1665	91.3265	93.0222	72.9912	1969	187	1973	148	100	67.5676
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	72.9893	2407	10	2407	1	1	100.0000
gduggal-snapfb	SNP	ti	map_l125_m2_e0	het	96.4670	97.3405	95.6090	72.9883	18374	502	18377	844	395	46.8009
ckim-dragen	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.4441	94.9275	98.0100	72.9839	393	21	394	8	8	100.0000
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	47.7477	40.9794	57.1942	72.9835	159	229	159	119	85	71.4286
astatham-gatk	SNP	ti	map_l150_m0_e0	homalt	98.9039	98.0442	99.7788	72.9781	2707	54	2707	6	6	100.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	60.5053	81.8731	47.9826	72.9778	542	120	880	954	458	48.0084
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	58.4615	42.2222	95.0000	72.9730	19	26	19	1	1	100.0000
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	58.4615	42.2222	95.0000	72.9730	19	26	19	1	1	100.0000
egarrison-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.2381	90.9091	100.0000	72.9730	40	4	40	0	0
gduggal-snapfb	INDEL	D6_15	map_l100_m2_e1	hetalt	58.9560	43.8356	90.0000	72.9730	32	41	9	1	1	100.0000
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	91.9411	87.7264	96.5812	72.9667	436	61	565	20	19	95.0000
ltrigg-rtg2	INDEL	I1_5	map_l100_m0_e0	homalt	99.2736	99.5192	99.0291	72.9659	207	1	204	2	1	50.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	55.3485	41.4226	83.3803	72.9627	297	420	296	59	57	96.6102
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	75.5641	66.4251	87.6190	72.9614	275	139	276	39	39	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.2287	96.5190	100.0000	72.9610	305	11	305	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8342	99.6690	100.0000	72.9599	2409	8	2409	0	0
anovak-vg	SNP	*	map_l150_m2_e0	homalt	88.0238	79.0922	99.2294	72.9596	9253	2446	9143	71	59	83.0986
hfeng-pmm3	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.8589	98.1645	99.5631	72.9590	47385	886	47175	207	154	74.3961
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	38.0404	35.5733	40.8751	72.9582	757	1371	766	1108	1004	90.6137
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9205	98.2346	99.6161	72.9579	15302	275	15309	59	45	76.2712
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	55.2529	51.8248	59.1667	72.9556	497	462	497	343	309	90.0875
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	86.4112	86.4829	86.3395	72.9555	659	103	651	103	64	62.1359
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	87.3175	87.0886	87.5476	72.9553	1376	204	1378	196	10	5.1020
anovak-vg	SNP	*	map_l150_m2_e1	homalt	88.0784	79.1748	99.2382	72.9549	9364	2463	9249	71	59	83.0986
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	88.2241	93.9024	83.1933	72.9545	77	5	99	20	18	90.0000
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	59.7610	42.8571	98.6842	72.9537	75	100	75	1	1	100.0000
dgrover-gatk	SNP	tv	map_l100_m2_e1	het	99.3081	99.5294	99.0878	72.9526	15863	75	15859	146	24	16.4384
bgallagher-sentieon	SNP	*	map_l125_m2_e0	*	99.2735	99.4499	99.0978	72.9518	46466	257	46460	423	70	16.5485
eyeh-varpipe	SNP	*	tech_badpromoters	het	72.0379	100.0000	56.2963	72.9459	77	0	76	59	0	0.0000
gduggal-bwafb	SNP	*	map_siren	hetalt	98.7500	97.5309	100.0000	72.9452	79	2	79	0	0
gduggal-bwafb	SNP	tv	map_siren	hetalt	98.7500	97.5309	100.0000	72.9452	79	2	79	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7580	99.7808	99.7353	72.9432	21851	48	21851	58	58	100.0000

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