PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43201-43250 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | tv | tech_badpromoters | * | 91.7293 | 84.7222 | 100.0000 | 73.8197 | 61 | 11 | 61 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0919 | 98.8333 | 99.3518 | 73.8158 | 2965 | 35 | 3372 | 22 | 17 | 77.2727 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 34.7356 | 24.1158 | 62.0690 | 73.8149 | 75 | 236 | 72 | 44 | 25 | 56.8182 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.4322 | 96.6365 | 96.2287 | 73.8133 | 747 | 26 | 791 | 31 | 21 | 67.7419 | |
| hfeng-pmm1 | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 73.8095 | 11 | 1 | 11 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | hetalt | 80.7692 | 67.7419 | 100.0000 | 73.8095 | 21 | 10 | 22 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 39.0246 | 30.7443 | 53.4091 | 73.8095 | 95 | 214 | 94 | 82 | 74 | 90.2439 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2445 | 98.8084 | 99.6845 | 73.8057 | 5058 | 61 | 5056 | 16 | 7 | 43.7500 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.5816 | 87.6404 | 98.1132 | 73.8056 | 156 | 22 | 156 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | het | 98.7395 | 98.9207 | 98.5590 | 73.8046 | 18881 | 206 | 18877 | 276 | 3 | 1.0870 | |
| ckim-isaac | SNP | * | map_l125_m1_e0 | het | 76.8418 | 62.5247 | 99.6632 | 73.8033 | 17752 | 10640 | 17754 | 60 | 10 | 16.6667 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.0674 | 97.7089 | 98.4286 | 73.8024 | 725 | 17 | 689 | 11 | 5 | 45.4545 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7710 | 98.6981 | 98.8439 | 73.8011 | 1592 | 21 | 1539 | 18 | 13 | 72.2222 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.3602 | 96.1713 | 98.5789 | 73.8003 | 1482 | 59 | 1873 | 27 | 17 | 62.9630 | |
| anovak-vg | INDEL | D1_5 | HG002compoundhet | homalt | 30.3224 | 87.2852 | 18.3482 | 73.7981 | 254 | 37 | 431 | 1918 | 1670 | 87.0699 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.6528 | 90.4762 | 94.9367 | 73.7977 | 152 | 16 | 150 | 8 | 7 | 87.5000 | |
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9460 | 98.5791 | 99.3156 | 73.7970 | 93107 | 1342 | 93014 | 641 | 576 | 89.8596 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | homalt | 77.0788 | 62.7343 | 99.9279 | 73.7914 | 6929 | 4116 | 6929 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 23.5849 | 13.9276 | 76.9231 | 73.7903 | 50 | 309 | 50 | 15 | 14 | 93.3333 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.3816 | 98.0381 | 96.7339 | 73.7893 | 29882 | 598 | 29440 | 994 | 753 | 75.7545 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.3816 | 98.0381 | 96.7339 | 73.7893 | 29882 | 598 | 29440 | 994 | 753 | 75.7545 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | homalt | 99.0304 | 98.2452 | 99.8283 | 73.7883 | 7558 | 135 | 7558 | 13 | 10 | 76.9231 | |
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | het | 98.7411 | 98.8195 | 98.6628 | 73.7814 | 6864 | 82 | 6862 | 93 | 49 | 52.6882 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 75.4767 | 66.4516 | 87.3385 | 73.7805 | 103 | 52 | 338 | 49 | 46 | 93.8776 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e1 | * | 97.6564 | 97.6506 | 97.6622 | 73.7732 | 24689 | 594 | 24689 | 591 | 141 | 23.8579 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 73.7705 | 64 | 9 | 64 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 52.6451 | 49.8736 | 55.7428 | 73.7700 | 1776 | 1785 | 1786 | 1418 | 1371 | 96.6855 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.9171 | 92.2101 | 89.6598 | 73.7675 | 28717 | 2426 | 29308 | 3380 | 1164 | 34.4379 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.9171 | 92.2101 | 89.6598 | 73.7675 | 28717 | 2426 | 29308 | 3380 | 1164 | 34.4379 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9696 | 98.6829 | 99.2581 | 73.7654 | 93205 | 1244 | 93112 | 696 | 583 | 83.7644 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | homalt | 99.0272 | 98.2405 | 99.8266 | 73.7644 | 7482 | 134 | 7482 | 13 | 10 | 76.9231 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.1412 | 85.3591 | 97.7636 | 73.7636 | 309 | 53 | 306 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 29.0805 | 20.8955 | 47.8070 | 73.7629 | 112 | 424 | 109 | 119 | 119 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 66.3507 | 66.6667 | 66.0377 | 73.7624 | 72 | 36 | 70 | 36 | 36 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | het | 74.0091 | 59.8013 | 97.0717 | 73.7610 | 662 | 445 | 663 | 20 | 10 | 50.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.7598 | 1 | 0 | 201 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | het | 95.0102 | 96.1466 | 93.9004 | 73.7575 | 12176 | 488 | 12177 | 791 | 378 | 47.7876 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.8690 | 94.5122 | 99.3464 | 73.7564 | 155 | 9 | 152 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.7912 | 97.4394 | 98.1455 | 73.7551 | 723 | 19 | 688 | 13 | 9 | 69.2308 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.3094 | 99.6937 | 95.0365 | 73.7548 | 651 | 2 | 651 | 34 | 34 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | het | 98.6644 | 97.6395 | 99.7111 | 73.7513 | 12078 | 292 | 12078 | 35 | 17 | 48.5714 | |
| astatham-gatk | SNP | * | map_l150_m0_e0 | homalt | 98.8775 | 98.0191 | 99.7511 | 73.7506 | 4008 | 81 | 4008 | 10 | 9 | 90.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 58.6667 | 66.6667 | 52.3810 | 73.7500 | 56 | 28 | 33 | 30 | 13 | 43.3333 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6451 | 98.4501 | 98.8410 | 73.7492 | 1588 | 25 | 1535 | 18 | 13 | 72.2222 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6551 | 99.1981 | 98.1180 | 73.7453 | 19422 | 157 | 19551 | 375 | 40 | 10.6667 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6551 | 99.1981 | 98.1180 | 73.7453 | 19422 | 157 | 19551 | 375 | 40 | 10.6667 | |
| ciseli-custom | SNP | ti | map_l100_m0_e0 | * | 82.2845 | 78.2555 | 86.7509 | 73.7443 | 17037 | 4734 | 17024 | 2600 | 753 | 28.9615 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 78.4779 | 66.1838 | 96.3816 | 73.7433 | 1462 | 747 | 1465 | 55 | 51 | 92.7273 | |