PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43051-43100 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 74.0741 | 19 | 4 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 74.0741 | 9 | 24 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.1732 | 97.8142 | 98.5348 | 74.0741 | 537 | 12 | 538 | 8 | 7 | 87.5000 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 92.0208 | 86.8227 | 97.8809 | 74.0738 | 3413 | 518 | 3418 | 74 | 11 | 14.8649 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6000 | 99.6361 | 99.5640 | 74.0720 | 1369 | 5 | 1370 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | map_l150_m2_e0 | * | 99.0695 | 98.3571 | 99.7923 | 74.0705 | 20175 | 337 | 20175 | 42 | 23 | 54.7619 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | het | 97.3347 | 97.1001 | 97.5704 | 74.0696 | 45538 | 1360 | 45540 | 1134 | 265 | 23.3686 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 85.4527 | 79.0606 | 92.9693 | 74.0678 | 9039 | 2394 | 9058 | 685 | 58 | 8.4672 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | het | 98.7960 | 98.9845 | 98.6083 | 74.0672 | 29339 | 301 | 29333 | 414 | 4 | 0.9662 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.6562 | 96.5251 | 98.8142 | 74.0646 | 500 | 18 | 500 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.2109 | 97.6112 | 87.3769 | 74.0644 | 4740 | 116 | 4790 | 692 | 106 | 15.3179 | |
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | homalt | 98.5610 | 97.4523 | 99.6952 | 74.0600 | 6541 | 171 | 6541 | 20 | 11 | 55.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8665 | 90.7063 | 97.2549 | 74.0590 | 244 | 25 | 248 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.8272 | 95.9868 | 99.7397 | 74.0574 | 2320 | 97 | 2299 | 6 | 4 | 66.6667 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | * | 98.9476 | 98.8812 | 99.0140 | 74.0560 | 30227 | 342 | 30227 | 301 | 85 | 28.2392 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | homalt | 91.9496 | 85.0988 | 100.0000 | 74.0535 | 3358 | 588 | 3358 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 61.4480 | 75.7576 | 51.6854 | 74.0525 | 25 | 8 | 46 | 43 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 74.8352 | 86.7069 | 65.8228 | 74.0520 | 574 | 88 | 572 | 297 | 264 | 88.8889 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | het | 98.1632 | 99.0762 | 97.2668 | 74.0488 | 30674 | 286 | 30676 | 862 | 158 | 18.3295 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2748 | 99.1091 | 99.4411 | 74.0482 | 63857 | 574 | 63870 | 359 | 327 | 91.0864 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0973 | 97.0711 | 99.1453 | 74.0433 | 464 | 14 | 464 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 87.1106 | 77.9126 | 98.7711 | 74.0431 | 642 | 182 | 643 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | SNP | ti | map_l150_m1_e0 | * | 99.4898 | 99.4217 | 99.5579 | 74.0428 | 19598 | 114 | 19594 | 87 | 14 | 16.0920 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e0 | het | 97.3254 | 97.0883 | 97.5636 | 74.0402 | 45048 | 1351 | 45050 | 1125 | 264 | 23.4667 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 74.0385 | 25 | 5 | 27 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4318 | 98.8701 | 100.0000 | 74.0356 | 175 | 2 | 175 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 34.7933 | 24.1573 | 62.1622 | 74.0351 | 43 | 135 | 46 | 28 | 27 | 96.4286 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 43.7022 | 33.3459 | 63.3893 | 74.0345 | 1772 | 3542 | 1773 | 1024 | 981 | 95.8008 | |
| cchapple-custom | SNP | tv | map_l125_m1_e0 | * | 96.5512 | 97.3027 | 95.8113 | 74.0329 | 15584 | 432 | 15577 | 681 | 116 | 17.0338 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | homalt | 99.2828 | 98.7905 | 99.7801 | 74.0325 | 4084 | 50 | 4084 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.0746 | 93.3535 | 96.8603 | 74.0318 | 618 | 44 | 617 | 20 | 2 | 10.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | homalt | 99.2738 | 98.7754 | 99.7773 | 74.0315 | 4033 | 50 | 4033 | 9 | 9 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | het | 98.1558 | 99.0660 | 97.2621 | 74.0240 | 30336 | 286 | 30338 | 854 | 157 | 18.3841 | |
| ckim-dragen | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 74.0223 | 93 | 6 | 93 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.2767 | 96.0630 | 90.6475 | 74.0187 | 122 | 5 | 126 | 13 | 7 | 53.8462 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.8852 | 91.7343 | 90.0517 | 74.0181 | 1243 | 112 | 1394 | 154 | 131 | 85.0649 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.1964 | 99.5470 | 98.8483 | 74.0177 | 14505 | 66 | 14505 | 169 | 12 | 7.1006 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.1964 | 99.5470 | 98.8483 | 74.0177 | 14505 | 66 | 14505 | 169 | 12 | 7.1006 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 76.2286 | 96.1797 | 63.1327 | 74.0117 | 4582 | 182 | 4615 | 2695 | 108 | 4.0074 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1533 | 98.7528 | 99.5572 | 74.0073 | 1346 | 17 | 1349 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | homalt | 97.6500 | 96.1538 | 99.1935 | 74.0042 | 125 | 5 | 123 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | map_l100_m2_e1 | het | 96.8714 | 97.9018 | 95.8624 | 74.0033 | 45914 | 984 | 45967 | 1984 | 408 | 20.5645 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.8902 | 95.7121 | 90.2299 | 74.0007 | 625 | 28 | 628 | 68 | 67 | 98.5294 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 36.9757 | 51.3011 | 28.9044 | 74.0000 | 138 | 131 | 124 | 305 | 17 | 5.5738 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e0 | het | 98.7929 | 98.9733 | 98.6131 | 73.9991 | 29017 | 301 | 29011 | 408 | 4 | 0.9804 | |
| jpowers-varprowl | INDEL | D1_5 | map_siren | homalt | 96.4427 | 94.0068 | 99.0081 | 73.9977 | 1098 | 70 | 1098 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | * | 98.9368 | 98.8697 | 99.0039 | 73.9957 | 29916 | 342 | 29916 | 301 | 85 | 28.2392 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.4194 | 99.4286 | 88.0952 | 73.9938 | 522 | 3 | 518 | 70 | 10 | 14.2857 | |