PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42901-42950 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 76.0563 | 61.3636 | 100.0000 | 74.2857 | 27 | 17 | 27 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 74.2857 | 63 | 5 | 63 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l100_m0_e0 | het | 97.6691 | 98.8629 | 96.5038 | 74.2830 | 13824 | 159 | 13829 | 501 | 46 | 9.1816 | |
| astatham-gatk | SNP | * | map_l100_m1_e0 | het | 86.7442 | 76.7367 | 99.7535 | 74.2815 | 34807 | 10552 | 34796 | 86 | 33 | 38.3721 | |
| ghariani-varprowl | INDEL | D1_5 | map_siren | homalt | 95.7280 | 94.0068 | 97.5133 | 74.2805 | 1098 | 70 | 1098 | 28 | 6 | 21.4286 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | het | 81.6533 | 76.9704 | 86.9429 | 74.2795 | 34913 | 10446 | 34838 | 5232 | 159 | 3.0390 | |
| hfeng-pmm2 | SNP | ti | map_l125_m1_e0 | het | 99.1603 | 99.2500 | 99.0708 | 74.2780 | 18129 | 137 | 18125 | 170 | 14 | 8.2353 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 2.7260 | 1.4416 | 25.0000 | 74.2765 | 19 | 1299 | 20 | 60 | 43 | 71.6667 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3672 | 99.1883 | 99.5468 | 74.2740 | 63908 | 523 | 63921 | 291 | 257 | 88.3162 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e0 | * | 98.8404 | 98.8764 | 98.8045 | 74.2723 | 46198 | 525 | 46198 | 559 | 136 | 24.3292 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | * | 99.3012 | 98.8437 | 99.7631 | 74.2719 | 11369 | 133 | 11369 | 27 | 12 | 44.4444 | |
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | * | 97.6658 | 98.4806 | 96.8644 | 74.2691 | 32342 | 499 | 32344 | 1047 | 227 | 21.6810 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 74.2690 | 0 | 1 | 0 | 88 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 76.7322 | 67.6471 | 88.6364 | 74.2690 | 46 | 22 | 39 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 50.3306 | 47.8296 | 53.1077 | 74.2686 | 2391 | 2608 | 2401 | 2120 | 1904 | 89.8113 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 50.3306 | 47.8296 | 53.1077 | 74.2686 | 2391 | 2608 | 2401 | 2120 | 1904 | 89.8113 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1065 | 97.5584 | 98.6607 | 74.2677 | 919 | 23 | 884 | 12 | 6 | 50.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2418 | 99.0470 | 99.4374 | 74.2668 | 63817 | 614 | 63806 | 361 | 326 | 90.3047 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8156 | 100.0000 | 99.6318 | 74.2657 | 1353 | 0 | 1353 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.0588 | 94.2857 | 100.0000 | 74.2647 | 33 | 2 | 35 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | het | 98.5889 | 98.6861 | 98.4920 | 74.2606 | 18026 | 240 | 18026 | 276 | 77 | 27.8986 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5127 | 95.9108 | 97.1223 | 74.2593 | 258 | 11 | 270 | 8 | 3 | 37.5000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 34.0392 | 86.1111 | 21.2121 | 74.2590 | 31 | 5 | 35 | 130 | 1 | 0.7692 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.3853 | 98.0620 | 98.7107 | 74.2575 | 8956 | 177 | 8958 | 117 | 19 | 16.2393 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.3853 | 98.0620 | 98.7107 | 74.2575 | 8956 | 177 | 8958 | 117 | 19 | 16.2393 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | * | 99.2922 | 98.8287 | 99.7600 | 74.2574 | 11222 | 133 | 11222 | 27 | 12 | 44.4444 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 47.0588 | 100.0000 | 30.7692 | 74.2574 | 8 | 0 | 8 | 18 | 18 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | HG002compoundhet | het | 98.0379 | 98.3796 | 97.6985 | 74.2557 | 1700 | 28 | 1698 | 40 | 38 | 95.0000 | |
| dgrover-gatk | SNP | * | map_l125_m2_e1 | * | 99.3336 | 99.3263 | 99.3409 | 74.2508 | 46884 | 318 | 46878 | 311 | 69 | 22.1865 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 72.9289 | 95.5040 | 58.9859 | 74.2486 | 1933 | 91 | 1966 | 1367 | 32 | 2.3409 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3182 | 97.9381 | 98.7013 | 74.2475 | 380 | 8 | 380 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.1176 | 88.8889 | 100.0000 | 74.2424 | 16 | 2 | 17 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.2758 | 92.1260 | 90.4412 | 74.2424 | 117 | 10 | 123 | 13 | 5 | 38.4615 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.0355 | 91.7808 | 98.5294 | 74.2424 | 67 | 6 | 67 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | map_l100_m1_e0 | hetalt | 73.9130 | 58.6207 | 100.0000 | 74.2424 | 17 | 12 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.6425 | 97.3214 | 100.0000 | 74.2389 | 109 | 3 | 110 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | het | 97.9160 | 98.5600 | 97.2803 | 74.2359 | 7118 | 104 | 7118 | 199 | 34 | 17.0854 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.4674 | 99.0988 | 97.8440 | 74.2336 | 47836 | 435 | 47787 | 1053 | 987 | 93.7322 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 67.8403 | 94.5137 | 52.9086 | 74.2327 | 379 | 22 | 382 | 340 | 307 | 90.2941 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | homalt | 98.9435 | 98.3702 | 99.5236 | 74.2304 | 2716 | 45 | 2716 | 13 | 12 | 92.3077 | |
| jlack-gatk | INDEL | D6_15 | map_siren | hetalt | 95.2880 | 91.9192 | 98.9130 | 74.2297 | 91 | 8 | 91 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 4.6119 | 2.5026 | 29.3478 | 74.2297 | 24 | 935 | 27 | 65 | 39 | 60.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.0645 | 48.6486 | 72.0000 | 74.2268 | 18 | 19 | 18 | 7 | 7 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 74.2243 | 108 | 4 | 108 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8893 | 100.0000 | 99.7788 | 74.2205 | 1353 | 0 | 1353 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8893 | 100.0000 | 99.7788 | 74.2205 | 1353 | 0 | 1353 | 3 | 1 | 33.3333 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8135 | 99.6690 | 99.9585 | 74.2163 | 2409 | 8 | 2409 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | map_l125_m2_e0 | * | 99.3279 | 99.3194 | 99.3363 | 74.2156 | 46405 | 318 | 46399 | 310 | 69 | 22.2581 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | homalt | 32.9688 | 92.1283 | 20.0767 | 74.2148 | 632 | 54 | 628 | 2500 | 2465 | 98.6000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.2258 | 91.1111 | 97.5610 | 74.2138 | 41 | 4 | 40 | 1 | 1 | 100.0000 | |