PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41701-41750 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.0530 | 88.5102 | 85.6431 | 75.6731 | 1610 | 209 | 1718 | 288 | 261 | 90.6250 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | homalt | 78.8863 | 65.6371 | 98.8372 | 75.6719 | 340 | 178 | 340 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 71.4933 | 61.7706 | 84.8485 | 75.6702 | 307 | 190 | 308 | 55 | 54 | 98.1818 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.1429 | 94.4444 | 100.0000 | 75.6691 | 102 | 6 | 100 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.3810 | 94.8490 | 75.9939 | 75.6668 | 31524 | 1712 | 31558 | 9969 | 9887 | 99.1775 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 11.1206 | 7.0388 | 26.4706 | 75.6646 | 58 | 766 | 63 | 175 | 113 | 64.5714 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 63.8421 | 54.7304 | 76.5939 | 75.6642 | 8799 | 7278 | 8770 | 2680 | 2299 | 85.7836 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 63.8421 | 54.7304 | 76.5939 | 75.6642 | 8799 | 7278 | 8770 | 2680 | 2299 | 85.7836 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.8203 | 96.1373 | 99.5633 | 75.6642 | 224 | 9 | 228 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8996 | 97.6190 | 98.1818 | 75.6637 | 164 | 4 | 162 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D6_15 | map_siren | hetalt | 96.3351 | 92.9293 | 100.0000 | 75.6614 | 92 | 7 | 92 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m1_e0 | homalt | 75.5546 | 60.7338 | 99.9438 | 75.6613 | 3559 | 2301 | 3559 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.9552 | 93.5145 | 98.5267 | 75.6611 | 1067 | 74 | 1070 | 16 | 10 | 62.5000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 56.7042 | 73.6842 | 46.0843 | 75.6598 | 84 | 30 | 153 | 179 | 4 | 2.2346 | |
| ckim-gatk | SNP | ti | map_l125_m2_e1 | homalt | 77.8127 | 63.7109 | 99.9316 | 75.6597 | 7300 | 4158 | 7300 | 5 | 4 | 80.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8339 | 99.7418 | 99.9261 | 75.6588 | 5409 | 14 | 5409 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8339 | 99.7418 | 99.9261 | 75.6588 | 5409 | 14 | 5409 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.3783 | 98.4848 | 96.2963 | 75.6574 | 325 | 5 | 312 | 12 | 6 | 50.0000 | |
| dgrover-gatk | SNP | tv | map_l150_m0_e0 | homalt | 99.2811 | 98.7952 | 99.7719 | 75.6572 | 1312 | 16 | 1312 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1889 | 97.3395 | 97.0388 | 75.6563 | 4866 | 133 | 4850 | 148 | 106 | 71.6216 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1889 | 97.3395 | 97.0388 | 75.6563 | 4866 | 133 | 4850 | 148 | 106 | 71.6216 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2761 | 99.4855 | 99.0676 | 75.6554 | 2127 | 11 | 2125 | 20 | 18 | 90.0000 | |
| raldana-dualsentieon | SNP | * | map_l150_m2_e1 | * | 98.9667 | 99.0283 | 98.9052 | 75.6537 | 31897 | 313 | 31891 | 353 | 12 | 3.3994 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | het | 18.9474 | 11.1111 | 64.2857 | 75.6522 | 2 | 16 | 18 | 10 | 8 | 80.0000 | |
| asubramanian-gatk | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 75.6522 | 0 | 0 | 0 | 28 | 0 | 0.0000 | ||
| bgallagher-sentieon | SNP | ti | map_l125_m2_e1 | het | 99.0933 | 99.3608 | 98.8273 | 75.6520 | 18965 | 122 | 18961 | 225 | 33 | 14.6667 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 3.2258 | 100.0000 | 1.6393 | 75.6487 | 2 | 0 | 2 | 120 | 2 | 1.6667 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 91.9586 | 87.5042 | 96.8908 | 75.6471 | 5196 | 742 | 2680 | 86 | 85 | 98.8372 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 50.1059 | 37.3855 | 75.9467 | 75.6447 | 1224 | 2050 | 1083 | 343 | 104 | 30.3207 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7380 | 99.8068 | 99.6692 | 75.6445 | 3616 | 7 | 3616 | 12 | 6 | 50.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 75.6410 | 0 | 1 | 0 | 57 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | I6_15 | HG002compoundhet | homalt | 46.3972 | 38.7097 | 57.8947 | 75.6410 | 12 | 19 | 11 | 8 | 8 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3786 | 99.4717 | 99.2856 | 75.6401 | 48016 | 255 | 47805 | 344 | 267 | 77.6163 | |
| hfeng-pmm1 | SNP | ti | map_l125_m0_e0 | het | 99.0169 | 98.7414 | 99.2940 | 75.6362 | 8159 | 104 | 8157 | 58 | 15 | 25.8621 | |
| eyeh-varpipe | SNP | tv | map_l125_m1_e0 | het | 96.7521 | 99.7334 | 93.9440 | 75.6347 | 10099 | 27 | 9990 | 644 | 13 | 2.0186 | |
| astatham-gatk | SNP | * | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 75.6303 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 75.6303 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 75.6303 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 75.6303 | 29 | 1 | 29 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.8661 | 82.5564 | 77.3455 | 75.6274 | 549 | 116 | 676 | 198 | 177 | 89.3939 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.1694 | 92.2078 | 96.2162 | 75.6258 | 355 | 30 | 356 | 14 | 2 | 14.2857 | |
| cchapple-custom | SNP | tv | map_l100_m2_e1 | het | 96.3138 | 98.0926 | 94.5983 | 75.6213 | 15634 | 304 | 15674 | 895 | 134 | 14.9721 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | * | 97.7664 | 96.4079 | 99.1637 | 75.6190 | 832 | 31 | 830 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.1487 | 95.7792 | 96.5210 | 75.6177 | 4788 | 211 | 4772 | 172 | 130 | 75.5814 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.1487 | 95.7792 | 96.5210 | 75.6177 | 4788 | 211 | 4772 | 172 | 130 | 75.5814 | |
| ckim-dragen | SNP | tv | map_l125_m2_e1 | * | 98.4134 | 99.0575 | 97.7776 | 75.6170 | 16500 | 157 | 16499 | 375 | 39 | 10.4000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6137 | 98.0720 | 99.1614 | 75.6166 | 1933 | 38 | 1892 | 16 | 8 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6137 | 98.0720 | 99.1614 | 75.6166 | 1933 | 38 | 1892 | 16 | 8 | 50.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.6164 | 89 | 0 | 89 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.6164 | 89 | 0 | 89 | 0 | 0 | ||