PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40451-40500 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | * | 95.5097 | 94.0511 | 97.0142 | 77.3448 | 70291 | 4446 | 70312 | 2164 | 1091 | 50.4159 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.0173 | 97.5541 | 98.4848 | 77.3439 | 1037 | 26 | 1040 | 16 | 9 | 56.2500 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e0 | het | 19.0000 | 11.1111 | 65.5172 | 77.3438 | 2 | 16 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 57.6740 | 98.5178 | 40.7711 | 77.3433 | 1994 | 30 | 2041 | 2965 | 42 | 1.4165 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4289 | 94.6309 | 96.2406 | 77.3424 | 141 | 8 | 128 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 76.8144 | 64.9791 | 93.9211 | 77.3415 | 9498 | 5119 | 9502 | 615 | 178 | 28.9431 | |
| ckim-dragen | SNP | tv | map_l150_m1_e0 | * | 98.2065 | 98.8636 | 97.5581 | 77.3404 | 10788 | 124 | 10787 | 270 | 27 | 10.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5688 | 98.7682 | 98.3702 | 77.3380 | 6575 | 82 | 6579 | 109 | 1 | 0.9174 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4305 | 99.1533 | 99.7093 | 77.3336 | 1054 | 9 | 1029 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | * | 95.4808 | 94.0120 | 96.9962 | 77.3300 | 69535 | 4429 | 69555 | 2154 | 1085 | 50.3714 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 73.7303 | 60.2941 | 94.8718 | 77.3256 | 41 | 27 | 37 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | * | map_l125_m2_e1 | het | 99.1713 | 99.3286 | 99.0144 | 77.3174 | 29441 | 199 | 29435 | 293 | 56 | 19.1126 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 68.7772 | 52.7619 | 98.7522 | 77.3150 | 554 | 496 | 554 | 7 | 2 | 28.5714 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 34.7605 | 22.3938 | 77.6316 | 77.3134 | 58 | 201 | 59 | 17 | 17 | 100.0000 | |
| gduggal-bwavard | SNP | ti | map_l100_m0_e0 | * | 95.3330 | 97.2027 | 93.5339 | 77.3132 | 21162 | 609 | 20989 | 1451 | 95 | 6.5472 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 78.1089 | 82.6087 | 74.0741 | 77.3109 | 19 | 4 | 20 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 62.5000 | 54.0541 | 74.0741 | 77.3109 | 20 | 17 | 20 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 56.8558 | 74.1379 | 46.1078 | 77.3098 | 86 | 30 | 154 | 180 | 4 | 2.2222 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.7242 | 88.2707 | 97.6510 | 77.3039 | 587 | 78 | 582 | 14 | 11 | 78.5714 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.4824 | 75.1220 | 86.6667 | 77.3014 | 154 | 51 | 156 | 24 | 18 | 75.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.4824 | 75.1220 | 86.6667 | 77.3014 | 154 | 51 | 156 | 24 | 18 | 75.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.5507 | 97.1429 | 100.0000 | 77.3006 | 34 | 1 | 37 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m0_e0 | * | 96.1705 | 96.0794 | 96.2618 | 77.2988 | 18625 | 760 | 18618 | 723 | 176 | 24.3430 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2415 | 98.7053 | 99.7836 | 77.2969 | 6023 | 79 | 5994 | 13 | 3 | 23.0769 | |
| gduggal-snapplat | SNP | ti | map_l150_m0_e0 | homalt | 90.3251 | 82.5063 | 99.7809 | 77.2958 | 2278 | 483 | 2277 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | HG002compoundhet | homalt | 12.0000 | 100.0000 | 6.3830 | 77.2947 | 3 | 0 | 3 | 44 | 43 | 97.7273 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5649 | 94.0520 | 99.2157 | 77.2930 | 253 | 16 | 253 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | ti | map_l125_m2_e1 | * | 82.1337 | 78.2100 | 86.4719 | 77.2907 | 23908 | 6661 | 23887 | 3737 | 990 | 26.4918 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | het | 96.7209 | 94.4516 | 99.1019 | 77.2848 | 2213 | 130 | 2207 | 20 | 2 | 10.0000 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | * | 82.0578 | 78.1149 | 86.4200 | 77.2839 | 23636 | 6622 | 23616 | 3711 | 984 | 26.5158 | |
| dgrover-gatk | SNP | * | map_l125_m2_e0 | het | 99.1639 | 99.3212 | 99.0070 | 77.2838 | 29119 | 199 | 29113 | 292 | 56 | 19.1781 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | * | 98.3535 | 97.3167 | 99.4126 | 77.2836 | 4062 | 112 | 4062 | 24 | 11 | 45.8333 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4633 | 93.6556 | 97.3422 | 77.2830 | 620 | 42 | 586 | 16 | 7 | 43.7500 | |
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | * | 95.4423 | 95.2231 | 95.6625 | 77.2744 | 18459 | 926 | 18460 | 837 | 394 | 47.0729 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | het | 95.8395 | 97.4959 | 94.2384 | 77.2735 | 7164 | 184 | 7164 | 438 | 174 | 39.7260 | |
| gduggal-snapvard | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 20.0000 | 77.2727 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 77.2727 | 0 | 0 | 0 | 10 | 8 | 80.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 10.3004 | 6.3830 | 26.6667 | 77.2727 | 3 | 44 | 4 | 11 | 10 | 90.9091 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 34.2857 | 40.0000 | 30.0000 | 77.2727 | 2 | 3 | 3 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 77.2727 | 24 | 9 | 24 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.2727 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.2727 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.2727 | 5 | 0 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | hetalt | 72.9211 | 61.2903 | 90.0000 | 77.2727 | 19 | 12 | 18 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.3860 | 83.9286 | 84.8485 | 77.2727 | 141 | 27 | 140 | 25 | 23 | 92.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.5556 | 95.5556 | 95.5556 | 77.2727 | 43 | 2 | 43 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 77.2727 | 10 | 2 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 77.6371 | 75.4098 | 80.0000 | 77.2727 | 46 | 15 | 48 | 12 | 9 | 75.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0588 | 98.9652 | 99.1525 | 77.2688 | 1052 | 11 | 1053 | 9 | 3 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.1165 | 94.7368 | 97.5369 | 77.2676 | 198 | 11 | 198 | 5 | 5 | 100.0000 | |