PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40301-40350 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 77.5510 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 77.5510 | 19 | 4 | 22 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 77.5510 | 11 | 1 | 11 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2618 | 91.9463 | 94.6154 | 77.5475 | 137 | 12 | 123 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.2804 | 95.7563 | 96.8102 | 77.5473 | 41496 | 1839 | 41428 | 1365 | 1297 | 95.0183 | |
| ciseli-custom | INDEL | D1_5 | HG002compoundhet | het | 30.2760 | 33.1981 | 27.8267 | 77.5472 | 573 | 1153 | 1105 | 2866 | 1255 | 43.7893 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | het | 65.2174 | 57.6923 | 75.0000 | 77.5439 | 45 | 33 | 48 | 16 | 13 | 81.2500 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 77.5362 | 64 | 9 | 62 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | map_l100_m1_e0 | het | 95.5858 | 97.2580 | 93.9701 | 77.5354 | 29121 | 821 | 28877 | 1853 | 139 | 7.5014 | |
| ltrigg-rtg2 | INDEL | * | map_siren | * | 98.2573 | 97.5304 | 98.9952 | 77.5300 | 7227 | 183 | 7192 | 73 | 11 | 15.0685 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 77.5281 | 20 | 2 | 20 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 92.7175 | 97.4908 | 88.3898 | 77.5276 | 1321 | 34 | 1279 | 168 | 162 | 96.4286 | |
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | het | 97.0530 | 98.7692 | 95.3955 | 77.5266 | 20944 | 261 | 20946 | 1011 | 206 | 20.3759 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6920 | 97.4178 | 100.0000 | 77.5262 | 830 | 22 | 794 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l100_m0_e0 | het | 88.7308 | 80.0000 | 99.6007 | 77.5238 | 16964 | 4241 | 16960 | 68 | 23 | 33.8235 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 61.3756 | 98.2368 | 44.6294 | 77.5231 | 4680 | 84 | 4745 | 5887 | 84 | 1.4269 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | * | 98.5692 | 99.6472 | 97.5143 | 77.5222 | 30501 | 108 | 29619 | 755 | 30 | 3.9735 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | het | 99.3647 | 99.4730 | 99.2567 | 77.5211 | 2265 | 12 | 2270 | 17 | 2 | 11.7647 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 77.5194 | 60 | 8 | 58 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_siren | homalt | 96.6164 | 95.5556 | 97.7011 | 77.5194 | 86 | 4 | 85 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.1322 | 87.6543 | 70.4762 | 77.5161 | 71 | 10 | 74 | 31 | 30 | 96.7742 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3984 | 98.6070 | 98.1907 | 77.5143 | 6017 | 85 | 6024 | 111 | 100 | 90.0901 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4149 | 94.6309 | 96.2121 | 77.5128 | 141 | 8 | 127 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4149 | 94.6309 | 96.2121 | 77.5128 | 141 | 8 | 127 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 28.4364 | 92.2444 | 16.8091 | 77.5112 | 785 | 66 | 846 | 4187 | 78 | 1.8629 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3133 | 97.6077 | 99.0291 | 77.5109 | 204 | 5 | 204 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_siren | het | 98.8087 | 98.2872 | 99.3357 | 77.5055 | 2238 | 39 | 2243 | 15 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.6508 | 100.0000 | 99.3039 | 77.5052 | 13 | 0 | 428 | 3 | 2 | 66.6667 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5642 | 99.5193 | 99.6091 | 77.5046 | 6625 | 32 | 6625 | 26 | 8 | 30.7692 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.3568 | 80.3493 | 91.0299 | 77.5037 | 552 | 135 | 548 | 54 | 32 | 59.2593 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.3179 | 98.6450 | 100.0000 | 77.5032 | 364 | 5 | 355 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.7513 | 98.3837 | 85.9566 | 77.5029 | 4687 | 77 | 4713 | 770 | 56 | 7.2727 | |
| ndellapenna-hhga | SNP | ti | map_l150_m0_e0 | * | 98.6696 | 97.6466 | 99.7142 | 77.5024 | 7676 | 185 | 7676 | 22 | 11 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 78.4414 | 76.5741 | 80.4020 | 77.5023 | 4658 | 1425 | 4800 | 1170 | 1056 | 90.2564 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | het | 95.8130 | 92.5311 | 99.3363 | 77.5012 | 446 | 36 | 449 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 78.1609 | 66.6667 | 94.4444 | 77.5000 | 18 | 9 | 17 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.5000 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.5000 | 9 | 0 | 9 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.5000 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.5000 | 18 | 2 | 18 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | func_cds | het | 94.1176 | 100.0000 | 88.8889 | 77.5000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 10.5263 | 100.0000 | 5.5556 | 77.5000 | 2 | 0 | 2 | 34 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | map_l100_m1_e0 | het | 96.3792 | 99.2318 | 93.6859 | 77.4968 | 29712 | 230 | 29705 | 2002 | 175 | 8.7413 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.6774 | 94.4237 | 71.9631 | 77.4935 | 6062 | 358 | 6078 | 2368 | 2066 | 87.2466 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 81.6774 | 94.4237 | 71.9631 | 77.4935 | 6062 | 358 | 6078 | 2368 | 2066 | 87.2466 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | * | 91.4854 | 87.2093 | 96.2025 | 77.4929 | 75 | 11 | 76 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.0973 | 96.9713 | 99.2497 | 77.4882 | 1857 | 58 | 1852 | 14 | 2 | 14.2857 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.0245 | 92.0752 | 98.1691 | 77.4877 | 1127 | 97 | 1126 | 21 | 11 | 52.3810 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1220 | 90.6977 | 100.0000 | 77.4869 | 78 | 8 | 86 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | * | het | 55.5939 | 38.8521 | 97.6895 | 77.4865 | 1056 | 1662 | 1057 | 25 | 13 | 52.0000 | |