PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39601-39650 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | het | 98.8799 | 99.2158 | 98.5462 | 78.5485 | 12273 | 97 | 12269 | 181 | 29 | 16.0221 | |
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | het | 98.9149 | 99.1251 | 98.7057 | 78.5477 | 19147 | 169 | 19141 | 251 | 23 | 9.1634 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 90.3416 | 83.2770 | 98.7159 | 78.5468 | 493 | 99 | 615 | 8 | 8 | 100.0000 | |
| ckim-dragen | SNP | * | map_l125_m2_e0 | het | 97.7348 | 98.9665 | 96.5334 | 78.5462 | 29015 | 303 | 29016 | 1042 | 91 | 8.7332 | |
| cchapple-custom | SNP | ti | map_l150_m2_e1 | * | 96.8601 | 96.7186 | 97.0020 | 78.5397 | 20043 | 680 | 20028 | 619 | 164 | 26.4943 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.3007 | 99.0279 | 99.5750 | 78.5377 | 10696 | 105 | 10777 | 46 | 21 | 45.6522 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6882 | 97.7707 | 97.6057 | 78.5372 | 1228 | 28 | 1223 | 30 | 9 | 30.0000 | |
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | het | 99.0031 | 99.1673 | 98.8394 | 78.5331 | 12267 | 103 | 12263 | 144 | 13 | 9.0278 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 90.2938 | 94.7900 | 86.2049 | 78.5292 | 4603 | 253 | 4568 | 731 | 64 | 8.7551 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.2685 | 95.4338 | 95.1039 | 78.5282 | 836 | 40 | 641 | 33 | 33 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 39.0244 | 34.0426 | 45.7143 | 78.5276 | 16 | 31 | 16 | 19 | 18 | 94.7368 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | het | 92.7987 | 86.8526 | 99.6189 | 78.5270 | 1308 | 198 | 1307 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 78.5256 | 67 | 5 | 67 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.8159 | 84.8980 | 77.1084 | 78.5252 | 416 | 74 | 256 | 76 | 74 | 97.3684 | |
| gduggal-bwavard | SNP | * | map_l125_m1_e0 | * | 95.6870 | 97.6989 | 93.7563 | 78.5243 | 44284 | 1043 | 43712 | 2911 | 180 | 6.1834 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.4579 | 88.5135 | 98.9873 | 78.5209 | 393 | 51 | 391 | 4 | 3 | 75.0000 | |
| jlack-gatk | INDEL | D1_5 | HG002compoundhet | het | 92.3786 | 97.8009 | 87.5259 | 78.5190 | 1690 | 38 | 1691 | 241 | 200 | 82.9876 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5413 | 99.0868 | 100.0000 | 78.5149 | 651 | 6 | 651 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 79.6646 | 82.6087 | 76.9231 | 78.5124 | 19 | 4 | 20 | 6 | 6 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.7794 | 95.0997 | 90.5697 | 78.5117 | 2814 | 145 | 2814 | 293 | 6 | 2.0478 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.8643 | 91.4147 | 84.5794 | 78.5110 | 26247 | 2465 | 26903 | 4905 | 1242 | 25.3211 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.8643 | 91.4147 | 84.5794 | 78.5110 | 26247 | 2465 | 26903 | 4905 | 1242 | 25.3211 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | * | 97.9147 | 96.4899 | 99.3822 | 78.5098 | 1292 | 47 | 1287 | 8 | 3 | 37.5000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 19.2946 | 18.8525 | 19.7581 | 78.5095 | 92 | 396 | 49 | 199 | 5 | 2.5126 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | * | 4.4800 | 2.3256 | 60.8696 | 78.5047 | 2 | 84 | 28 | 18 | 12 | 66.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.5047 | 22 | 4 | 23 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.5047 | 22 | 4 | 23 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 78.5047 | 69 | 3 | 69 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 78.5021 | 1 | 0 | 0 | 155 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | map_l125_m0_e0 | * | 95.8633 | 96.5164 | 95.2189 | 78.5014 | 6400 | 231 | 6393 | 321 | 56 | 17.4455 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 71.5265 | 61.2613 | 85.9244 | 78.5005 | 408 | 258 | 409 | 67 | 27 | 40.2985 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 71.5265 | 61.2613 | 85.9244 | 78.5005 | 408 | 258 | 409 | 67 | 27 | 40.2985 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5000 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5000 | 43 | 0 | 43 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | map_l100_m1_e0 | het | 92.4877 | 97.3990 | 88.0480 | 78.4967 | 15016 | 401 | 14962 | 2031 | 139 | 6.8439 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 71.8331 | 93.3976 | 58.3587 | 78.4954 | 8530 | 603 | 8633 | 6160 | 87 | 1.4123 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 71.8331 | 93.3976 | 58.3587 | 78.4954 | 8530 | 603 | 8633 | 6160 | 87 | 1.4123 | |
| hfeng-pmm1 | INDEL | D1_5 | map_siren | * | 99.0467 | 98.5832 | 99.5147 | 78.4947 | 3479 | 50 | 3486 | 17 | 2 | 11.7647 | |
| jli-custom | SNP | * | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4946 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4946 | 20 | 0 | 20 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 78.4946 | 20 | 2 | 20 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_l100_m1_e0 | het | 95.6776 | 99.2570 | 92.3473 | 78.4943 | 45022 | 337 | 45011 | 3730 | 265 | 7.1046 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.8061 | 99.8706 | 99.7416 | 78.4940 | 772 | 1 | 772 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.6821 | 98.0105 | 99.3631 | 78.4932 | 936 | 19 | 936 | 6 | 3 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 62.7551 | 45.8955 | 99.1935 | 78.4909 | 246 | 290 | 246 | 2 | 1 | 50.0000 | |
| ckim-dragen | SNP | * | map_l150_m2_e0 | * | 98.2382 | 98.8980 | 97.5872 | 78.4892 | 31501 | 351 | 31507 | 779 | 94 | 12.0668 | |
| jmaeng-gatk | INDEL | I1_5 | map_siren | homalt | 99.5051 | 99.4224 | 99.5878 | 78.4891 | 1205 | 7 | 1208 | 5 | 4 | 80.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.8115 | 95.9651 | 99.7303 | 78.4840 | 4067 | 171 | 4068 | 11 | 1 | 9.0909 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1862 | 98.8261 | 99.5489 | 78.4824 | 1347 | 16 | 1324 | 6 | 3 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 79.7784 | 69.2308 | 94.1176 | 78.4810 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |