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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 784 785 786 787 788 789 790 791 792 ... 1720 1721 » 39351-39400 / 86044 show all
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	78.8544	346	0	346	1	1	100.0000
hfeng-pmm2	SNP	*	map_l125_m0_e0	het	98.6818	99.0287	98.3373	78.8543	12541	123	12538	212	20	9.4340
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.2945	95.0894	99.6044	78.8532	6545	338	6546	26	3	11.5385
jlack-gatk	INDEL	I16_PLUS	func_cds	*	95.6522	91.6667	100.0000	78.8462	11	1	11	0	0
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	92.0548	88.8889	95.4545	78.8462	256	32	231	11	8	72.7273
asubramanian-gatk	INDEL	C1_5	*	het	0.0000	77.7778	0.0000	78.8462	7	2	0	242	0	0.0000
ltrigg-rtg2	INDEL	C6_15	HG002complexvar	het	99.1354	100.0000	98.2857	78.8392	4	0	172	3	0	0.0000
eyeh-varpipe	SNP	*	map_l150_m2_e0	*	98.5884	99.6578	97.5418	78.8388	31743	109	30831	777	30	3.8610
gduggal-snapvard	INDEL	I6_15	map_l100_m1_e0	*	60.7947	60.5263	61.0656	78.8378	69	45	149	95	77	81.0526
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	55.8140	72.1805	45.4976	78.8365	96	37	96	115	111	96.5217
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.1228	96.5257	97.7273	78.8316	639	23	602	14	8	57.1429
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4572	99.2298	99.6856	78.8294	6055	47	6025	19	12	63.1579
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	97.8006	97.5318	98.0707	78.8291	1225	31	1220	24	7	29.1667
bgallagher-sentieon	SNP	tv	map_l150_m1_e0	het	98.5918	99.3090	97.8850	78.8267	6898	48	6896	149	20	13.4228
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7409	99.6119	99.8703	78.8245	770	3	770	1	0	0.0000
gduggal-bwafb	INDEL	I1_5	map_siren	homalt	98.9302	99.0099	98.8506	78.8211	1200	12	1204	14	8	57.1429
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	90.6416	91.6129	89.6907	78.8210	142	13	174	20	19	95.0000
ltrigg-rtg2	INDEL	D1_5	map_l125_m1_e0	*	98.0469	96.8750	99.2474	78.8205	1054	34	1055	8	1	12.5000
eyeh-varpipe	SNP	ti	map_l150_m2_e1	*	99.1748	99.6284	98.7252	78.8203	20646	77	20291	262	16	6.1069
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	78.0922	83.0612	73.6842	78.8197	407	83	238	85	81	95.2941
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.0443	95.9215	98.1938	78.8174	635	27	598	11	7	63.6364
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	65.7233	50.4831	94.1441	78.8168	209	205	209	13	8	61.5385
jli-custom	INDEL	I1_5	map_siren	*	99.2153	98.8353	99.5983	78.8156	2970	35	2975	12	4	33.3333
egarrison-hhga	SNP	*	map_l150_m0_e0	*	99.0549	98.4292	99.6886	78.8145	11843	189	11843	37	16	43.2432
ltrigg-rtg2	INDEL	D6_15	map_siren	*	97.4111	96.4637	98.3773	78.8139	491	18	485	8	0	0.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	78.7845	66.1017	97.4895	78.8121	234	120	233	6	2	33.3333
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	97.4359	95.0000	100.0000	78.8104	57	3	57	0	0
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	97.4359	95.0000	100.0000	78.8104	57	3	57	0	0
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	97.4359	95.0000	100.0000	78.8104	57	3	57	0	0
gduggal-snapplat	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	26.8531	20.9150	37.5000	78.8079	32	121	24	40	15	37.5000
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	97.6744	95.4545	100.0000	78.8079	126	6	128	0	0
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.1132	96.2963	100.0000	78.8043	78	3	78	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.1132	96.2963	100.0000	78.8043	78	3	78	0	0
jlack-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	98.7013	100.0000	97.4359	78.8043	37	0	38	1	0	0.0000
cchapple-custom	SNP	*	map_l150_m2_e0	*	96.6523	96.8134	96.4917	78.8019	30837	1015	30832	1121	246	21.9447
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.1168	99.0593	99.1743	78.7979	1053	10	1081	9	4	44.4444
ltrigg-rtg2	INDEL	*	map_l100_m2_e1	homalt	98.6597	97.6581	99.6820	78.7966	1251	30	1254	4	2	50.0000
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	91.6616	88.6905	94.8387	78.7962	149	19	147	8	6	75.0000
raldana-dualsentieon	INDEL	I6_15	map_l125_m1_e0	hetalt	93.3333	87.5000	100.0000	78.7879	7	1	7	0	0
eyeh-varpipe	INDEL	I16_PLUS	map_l150_m2_e0	*	41.3793	27.2727	85.7143	78.7879	3	8	6	1	1	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	97.2332	96.8504	97.6190	78.7879	123	4	123	3	2	66.6667
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	80.0000	75.0000	85.7143	78.7879	6	2	6	1	1	100.0000
ltrigg-rtg1	INDEL	I16_PLUS	map_l125_m1_e0	het	75.0000	66.6667	85.7143	78.7879	6	3	6	1	0	0.0000
ckim-isaac	INDEL	D6_15	map_l100_m0_e0	hetalt	84.8485	73.6842	100.0000	78.7879	14	5	14	0	0
astatham-gatk	SNP	*	map_l150_m1_e0	*	91.4460	84.4686	99.6799	78.7872	25855	4754	25849	83	39	46.9880
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.2560	99.0686	99.4441	78.7870	6595	62	6619	37	15	40.5405
jpowers-varprowl	SNP	tv	map_l125_m1_e0	het	96.3069	96.4448	96.1694	78.7859	9766	360	9766	389	92	23.6504
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.2698	98.4163	96.1497	78.7844	3853	62	3571	143	49	34.2657
gduggal-bwaplat	SNP	tv	map_siren	het	91.2244	84.4245	99.2157	78.7828	24153	4456	24161	191	46	24.0838
gduggal-bwaplat	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	68.9830	54.5121	93.9135	78.7818	5491	4582	5493	356	149	41.8539

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