PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39301-39350 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | homalt | 89.7981 | 81.5847 | 99.8503 | 78.9397 | 3336 | 753 | 3336 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.1230 | 32.4837 | 56.0227 | 78.9373 | 497 | 1033 | 493 | 387 | 383 | 98.9664 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 41.1230 | 32.4837 | 56.0227 | 78.9373 | 497 | 1033 | 493 | 387 | 383 | 98.9664 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | * | 94.9586 | 97.9708 | 92.1260 | 78.9367 | 15691 | 325 | 15643 | 1337 | 72 | 5.3852 | |
| ckim-vqsr | INDEL | D1_5 | HG002compoundhet | het | 96.1223 | 98.2639 | 94.0720 | 78.9357 | 1698 | 30 | 1698 | 107 | 105 | 98.1308 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e0 | het | 96.3718 | 93.5614 | 99.3562 | 78.9331 | 465 | 32 | 463 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3667 | 99.1478 | 99.5866 | 78.9281 | 6050 | 52 | 6022 | 25 | 8 | 32.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 63.9582 | 52.6316 | 81.4969 | 78.9220 | 390 | 351 | 392 | 89 | 11 | 12.3596 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | homalt | 94.9724 | 91.2023 | 99.0676 | 78.9189 | 311 | 30 | 425 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.1132 | 96.2963 | 100.0000 | 78.9189 | 78 | 3 | 78 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.1132 | 96.2963 | 100.0000 | 78.9189 | 78 | 3 | 78 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_siren | het | 96.4251 | 96.0958 | 96.7566 | 78.9179 | 4332 | 176 | 4803 | 161 | 108 | 67.0807 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.3394 | 95.0151 | 97.7011 | 78.9127 | 629 | 33 | 595 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | homalt | 83.6364 | 95.8333 | 74.1935 | 78.9116 | 23 | 1 | 23 | 8 | 7 | 87.5000 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | homalt | 68.8793 | 98.4802 | 52.9605 | 78.9109 | 324 | 5 | 322 | 286 | 246 | 86.0140 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | homalt | 65.3285 | 48.5182 | 99.9634 | 78.9108 | 8202 | 8703 | 8195 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | HG002compoundhet | het | 96.2104 | 98.4375 | 94.0819 | 78.9081 | 1701 | 27 | 1701 | 107 | 105 | 98.1308 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | het | 80.3653 | 73.3333 | 88.8889 | 78.9062 | 22 | 8 | 24 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l100_m0_e0 | het | 77.1628 | 71.2049 | 84.2088 | 78.9054 | 15099 | 6106 | 15086 | 2829 | 99 | 3.4995 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8504 | 96.8504 | 96.8504 | 78.9037 | 123 | 4 | 123 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | * | 98.5942 | 99.6616 | 97.5494 | 78.9029 | 32101 | 109 | 31168 | 783 | 30 | 3.8314 | |
| anovak-vg | INDEL | D6_15 | map_siren | het | 77.1497 | 77.5000 | 76.8025 | 78.9021 | 217 | 63 | 245 | 74 | 50 | 67.5676 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.7255 | 97.6911 | 97.7600 | 78.8994 | 1227 | 29 | 1222 | 28 | 7 | 25.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | homalt | 58.6900 | 43.2432 | 91.3043 | 78.8991 | 16 | 21 | 21 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.2028 | 81.7073 | 76.8473 | 78.8981 | 134 | 30 | 156 | 47 | 42 | 89.3617 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | homalt | 96.6288 | 96.6667 | 96.5909 | 78.8969 | 87 | 3 | 85 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 78.3548 | 95.3881 | 66.4830 | 78.8960 | 13899 | 672 | 13998 | 7057 | 339 | 4.8037 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 78.3548 | 95.3881 | 66.4830 | 78.8960 | 13899 | 672 | 13998 | 7057 | 339 | 4.8037 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.0411 | 80.9896 | 91.7647 | 78.8951 | 311 | 73 | 312 | 28 | 8 | 28.5714 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.8945 | 42 | 0 | 42 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.8945 | 42 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l250_m1_e0 | het | 96.4484 | 93.3754 | 99.7305 | 78.8925 | 4440 | 315 | 4440 | 12 | 4 | 33.3333 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 81.0483 | 98.1785 | 69.0078 | 78.8892 | 539 | 10 | 619 | 278 | 189 | 67.9856 | |
| qzeng-custom | INDEL | I6_15 | map_siren | het | 67.1265 | 81.8182 | 56.9079 | 78.8889 | 117 | 26 | 173 | 131 | 7 | 5.3435 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 78.8889 | 37 | 0 | 38 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 78.8889 | 37 | 0 | 38 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | homalt | 72.2900 | 56.6125 | 99.9759 | 78.8887 | 4148 | 3179 | 4148 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | tv | map_l150_m1_e0 | * | 79.0094 | 85.9421 | 73.1117 | 78.8881 | 9378 | 1534 | 9370 | 3446 | 807 | 23.4185 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7108 | 98.7484 | 98.6731 | 78.8824 | 3866 | 49 | 3867 | 52 | 45 | 86.5385 | |
| ghariani-varprowl | INDEL | * | map_l100_m1_e0 | homalt | 94.7855 | 91.8500 | 97.9149 | 78.8807 | 1127 | 100 | 1127 | 24 | 8 | 33.3333 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | het | 95.4495 | 95.2475 | 95.6523 | 78.8806 | 28519 | 1423 | 28557 | 1298 | 664 | 51.1556 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.2144 | 57.9892 | 95.6871 | 78.8764 | 2261 | 1638 | 2263 | 102 | 21 | 20.5882 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7785 | 99.2790 | 98.2829 | 78.8740 | 28505 | 207 | 28505 | 498 | 33 | 6.6265 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7785 | 99.2790 | 98.2829 | 78.8740 | 28505 | 207 | 28505 | 498 | 33 | 6.6265 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.6971 | 97.7077 | 99.7067 | 78.8724 | 341 | 8 | 340 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3289 | 99.5281 | 99.1304 | 78.8666 | 4218 | 20 | 4218 | 37 | 6 | 16.2162 | |
| cchapple-custom | SNP | * | map_l150_m2_e1 | * | 96.6680 | 96.8395 | 96.4971 | 78.8652 | 31192 | 1018 | 31184 | 1132 | 247 | 21.8198 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.7117 | 92.9088 | 77.8438 | 78.8648 | 4494 | 343 | 4455 | 1268 | 79 | 6.2303 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | * | 74.7799 | 65.3095 | 87.4627 | 78.8610 | 2342 | 1244 | 2344 | 336 | 264 | 78.5714 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1110 | 99.1228 | 99.0991 | 78.8571 | 113 | 1 | 110 | 1 | 0 | 0.0000 | |