PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39151-39200 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D1_5 | map_siren | homalt | 99.1884 | 99.4007 | 98.9770 | 79.1578 | 1161 | 7 | 1161 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e0 | * | 93.8841 | 96.2555 | 91.6267 | 79.1557 | 29125 | 1133 | 28856 | 2637 | 225 | 8.5324 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 4.6990 | 2.6273 | 22.2222 | 79.1506 | 16 | 593 | 24 | 84 | 48 | 57.1429 | |
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | * | 96.7602 | 95.9489 | 97.5853 | 79.1496 | 12245 | 517 | 12245 | 303 | 110 | 36.3036 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7326 | 99.5995 | 99.8661 | 79.1457 | 1492 | 6 | 1492 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6394 | 98.6486 | 98.6301 | 79.1429 | 73 | 1 | 72 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5410 | 96.4067 | 98.7024 | 79.1406 | 1100 | 41 | 1217 | 16 | 12 | 75.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9211 | 97.8503 | 97.9920 | 79.1387 | 1229 | 27 | 1220 | 25 | 7 | 28.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | het | 96.0834 | 92.9961 | 99.3827 | 79.1327 | 478 | 36 | 483 | 3 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | map_l125_m0_e0 | * | 93.2991 | 87.8751 | 99.4368 | 79.1316 | 5827 | 804 | 5826 | 33 | 9 | 27.2727 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.1304 | 22 | 4 | 24 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.1124 | 96.0968 | 84.8297 | 79.1299 | 1748 | 71 | 1644 | 294 | 276 | 93.8776 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 90.1124 | 96.0968 | 84.8297 | 79.1299 | 1748 | 71 | 1644 | 294 | 276 | 93.8776 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.3062 | 98.0769 | 98.5366 | 79.1242 | 204 | 4 | 202 | 3 | 2 | 66.6667 | |
| ckim-dragen | SNP | tv | map_l125_m2_e1 | het | 97.7464 | 98.8534 | 96.6639 | 79.1212 | 10432 | 121 | 10431 | 360 | 26 | 7.2222 | |
| ghariani-varprowl | SNP | tv | map_l125_m1_e0 | het | 96.7384 | 99.1507 | 94.4408 | 79.1185 | 10040 | 86 | 10040 | 591 | 91 | 15.3976 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | homalt | 96.7348 | 97.5248 | 95.9574 | 79.1173 | 1182 | 30 | 1353 | 57 | 49 | 85.9649 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 79.1155 | 0 | 0 | 0 | 85 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I1_5 | map_siren | homalt | 97.1653 | 94.7195 | 99.7407 | 79.1155 | 1148 | 64 | 1154 | 3 | 2 | 66.6667 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8254 | 98.0798 | 97.5723 | 79.1147 | 30545 | 598 | 30586 | 761 | 104 | 13.6662 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8254 | 98.0798 | 97.5723 | 79.1147 | 30545 | 598 | 30586 | 761 | 104 | 13.6662 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | * | 97.5167 | 99.7182 | 95.4103 | 79.1143 | 11323 | 32 | 11267 | 542 | 14 | 2.5830 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.9180 | 98.7044 | 99.1325 | 79.1132 | 28340 | 372 | 28340 | 248 | 29 | 11.6935 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.9180 | 98.7044 | 99.1325 | 79.1132 | 28340 | 372 | 28340 | 248 | 29 | 11.6935 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2306 | 96.8831 | 97.5806 | 79.1129 | 373 | 12 | 363 | 9 | 8 | 88.8889 | |
| gduggal-bwavard | SNP | tv | map_l100_m1_e0 | het | 94.3634 | 98.1060 | 90.8959 | 79.1108 | 15125 | 292 | 15076 | 1510 | 87 | 5.7616 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.6256 | 97.1429 | 98.1132 | 79.1104 | 374 | 11 | 364 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | het | 96.0425 | 92.9119 | 99.3915 | 79.1102 | 485 | 37 | 490 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.3555 | 99.2863 | 97.4421 | 79.1072 | 14467 | 104 | 14476 | 380 | 19 | 5.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.3555 | 99.2863 | 97.4421 | 79.1072 | 14467 | 104 | 14476 | 380 | 19 | 5.0000 | |
| ndellapenna-hhga | INDEL | * | map_siren | homalt | 98.6802 | 98.5687 | 98.7920 | 79.0989 | 2617 | 38 | 2617 | 32 | 23 | 71.8750 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.6387 | 98.1030 | 99.1803 | 79.0977 | 362 | 7 | 363 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4286 | 100.0000 | 98.8636 | 79.0974 | 87 | 0 | 87 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.7615 | 97.6623 | 97.8610 | 79.0945 | 376 | 9 | 366 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | homalt | 67.1322 | 92.7778 | 52.5941 | 79.0940 | 501 | 39 | 517 | 466 | 438 | 93.9914 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.0909 | 22 | 4 | 23 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | het | 96.3546 | 93.7008 | 99.1632 | 79.0901 | 476 | 32 | 474 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.5979 | 99.1989 | 100.0000 | 79.0898 | 1486 | 12 | 1507 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 79.0850 | 16 | 0 | 32 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7114 | 99.7110 | 99.7118 | 79.0838 | 345 | 1 | 346 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | homalt | 67.4017 | 92.6554 | 52.9657 | 79.0814 | 492 | 39 | 509 | 452 | 424 | 93.8053 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.9387 | 93.8776 | 94.0000 | 79.0795 | 46 | 3 | 47 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | * | 96.4575 | 99.6230 | 93.4869 | 79.0795 | 6606 | 25 | 6574 | 458 | 11 | 2.4018 | |
| hfeng-pmm3 | INDEL | I1_5 | map_siren | * | 99.4006 | 99.2346 | 99.5672 | 79.0750 | 2982 | 23 | 2991 | 13 | 3 | 23.0769 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 62.0275 | 82.7982 | 49.5879 | 79.0744 | 361 | 75 | 361 | 367 | 274 | 74.6594 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0654 | 98.1481 | 100.0000 | 79.0744 | 106 | 2 | 104 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.0432 | 83.2653 | 73.4375 | 79.0713 | 408 | 82 | 235 | 85 | 83 | 97.6471 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2332 | 96.8504 | 97.6190 | 79.0698 | 123 | 4 | 123 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | hetalt | 91.2281 | 86.6667 | 96.2963 | 79.0698 | 26 | 4 | 26 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.0698 | 9 | 0 | 9 | 0 | 0 | ||