PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39051-39100 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 70.5882 | 54.5455 | 100.0000 | 79.3103 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.3103 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.1132 | 96.2963 | 100.0000 | 79.3103 | 78 | 3 | 78 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 79.3103 | 12 | 16 | 12 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 16.6667 | 79.3103 | 0 | 0 | 1 | 5 | 2 | 40.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.8944 | 97.9221 | 97.8667 | 79.3046 | 377 | 8 | 367 | 8 | 7 | 87.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002compoundhet | het | 95.8083 | 98.4954 | 93.2640 | 79.3041 | 1702 | 26 | 1703 | 123 | 122 | 99.1870 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 69.9400 | 54.1784 | 98.6348 | 79.3006 | 577 | 488 | 578 | 8 | 7 | 87.5000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.6190 | 96.1877 | 99.0937 | 79.2996 | 328 | 13 | 328 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e1 | het | 95.3077 | 97.5777 | 93.1409 | 79.2994 | 45762 | 1136 | 45178 | 3327 | 221 | 6.6426 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | het | 97.8416 | 99.5651 | 96.1767 | 79.2991 | 19232 | 84 | 18640 | 741 | 22 | 2.9690 | |
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | het | 98.4153 | 98.7957 | 98.0379 | 79.2988 | 4348 | 53 | 4347 | 87 | 9 | 10.3448 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.6541 | 92.2535 | 81.6956 | 79.2980 | 786 | 66 | 848 | 190 | 161 | 84.7368 | |
| ghariani-varprowl | SNP | * | map_l150_m1_e0 | * | 97.5510 | 98.4482 | 96.6701 | 79.2964 | 30134 | 475 | 30134 | 1038 | 222 | 21.3873 | |
| jli-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.6154 | 100.0000 | 99.2337 | 79.2939 | 518 | 0 | 518 | 4 | 3 | 75.0000 | |
| cchapple-custom | SNP | tv | map_l125_m2_e0 | het | 95.6050 | 97.6250 | 93.6669 | 79.2937 | 10194 | 248 | 10220 | 691 | 117 | 16.9320 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 77.7092 | 98.6486 | 64.1026 | 79.2920 | 73 | 1 | 75 | 42 | 35 | 83.3333 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7512 | 99.5449 | 99.9585 | 79.2911 | 2406 | 11 | 2406 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 2.6388 | 1.3951 | 24.3243 | 79.2910 | 25 | 1767 | 27 | 84 | 48 | 57.1429 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6329 | 99.4764 | 99.7899 | 79.2908 | 950 | 5 | 950 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | map_siren | homalt | 99.3983 | 98.9726 | 99.8277 | 79.2900 | 1156 | 12 | 1159 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | * | 96.4953 | 94.2418 | 98.8591 | 79.2883 | 1473 | 90 | 1473 | 17 | 4 | 23.5294 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | het | 96.1715 | 99.6977 | 92.8862 | 79.2854 | 6925 | 21 | 6855 | 525 | 11 | 2.0952 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | * | 99.1622 | 98.8665 | 99.4596 | 79.2799 | 3489 | 40 | 3497 | 19 | 5 | 26.3158 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.7615 | 97.6623 | 97.8610 | 79.2798 | 376 | 9 | 366 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 79.2793 | 23 | 0 | 23 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | het | 95.2824 | 97.5581 | 93.1104 | 79.2787 | 45266 | 1133 | 44693 | 3307 | 217 | 6.5618 | |
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | het | 98.0583 | 96.6751 | 99.4816 | 79.2753 | 7676 | 264 | 7676 | 40 | 17 | 42.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | het | 61.6561 | 45.2174 | 96.8750 | 79.2746 | 156 | 189 | 155 | 5 | 2 | 40.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.9792 | 95.6179 | 98.3798 | 79.2724 | 1091 | 50 | 1093 | 18 | 12 | 66.6667 | |
| cchapple-custom | INDEL | D1_5 | map_siren | het | 97.0834 | 98.5946 | 95.6177 | 79.2698 | 2245 | 32 | 2291 | 105 | 10 | 9.5238 | |
| ckim-gatk | INDEL | D16_PLUS | * | het | 97.6163 | 99.3985 | 95.8968 | 79.2687 | 3140 | 19 | 2898 | 124 | 70 | 56.4516 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 79.2683 | 17 | 2 | 17 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8557 | 100.0000 | 99.7118 | 79.2588 | 346 | 0 | 346 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | * | hetalt | 93.2065 | 88.0527 | 99.0011 | 79.2540 | 9021 | 1224 | 3568 | 36 | 36 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.5657 | 99.5192 | 97.6303 | 79.2527 | 207 | 1 | 206 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4790 | 100.0000 | 95.0820 | 79.2517 | 61 | 0 | 58 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8024 | 98.8095 | 98.7952 | 79.2500 | 166 | 2 | 164 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_siren | homalt | 99.4357 | 99.4727 | 99.3987 | 79.2482 | 2641 | 14 | 2645 | 16 | 9 | 56.2500 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 79.2453 | 0 | 35 | 0 | 11 | 0 | 0.0000 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | HG002compoundhet | homalt | 52.6316 | 62.5000 | 45.4545 | 79.2453 | 5 | 3 | 5 | 6 | 6 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l125_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 79.2453 | 22 | 2 | 22 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l125_m1_e0 | het | 97.3392 | 95.8052 | 98.9231 | 79.2399 | 1279 | 56 | 1286 | 14 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8124 | 100.0000 | 97.6526 | 79.2398 | 208 | 0 | 208 | 5 | 3 | 60.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1807 | 95.9350 | 98.4592 | 79.2386 | 236 | 10 | 639 | 10 | 6 | 60.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 69.8019 | 55.0659 | 95.3064 | 79.2366 | 1462 | 1193 | 1462 | 72 | 30 | 41.6667 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.8944 | 97.9221 | 97.8667 | 79.2359 | 377 | 8 | 367 | 8 | 7 | 87.5000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 79.2350 | 37 | 0 | 38 | 0 | 0 | ||