PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38951-39000 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | map_l150_m0_e0 | het | 98.6520 | 97.8192 | 99.4991 | 79.4500 | 2781 | 62 | 2781 | 14 | 5 | 35.7143 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1963 | 97.6190 | 98.7805 | 79.4486 | 164 | 4 | 162 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 4.2984 | 80.9524 | 2.2078 | 79.4447 | 34 | 8 | 34 | 1506 | 9 | 0.5976 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 15.0000 | 100.0000 | 8.1081 | 79.4444 | 3 | 0 | 3 | 34 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | * | 60.8455 | 60.3448 | 61.3546 | 79.4431 | 70 | 46 | 154 | 97 | 79 | 81.4433 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4313 | 95.5645 | 99.3724 | 79.4409 | 474 | 22 | 475 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.6122 | 99.4536 | 81.5431 | 79.4401 | 546 | 3 | 539 | 122 | 105 | 86.0656 | |
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | hetalt | 95.6522 | 91.6667 | 100.0000 | 79.4393 | 22 | 2 | 22 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3823 | 95.3945 | 99.4547 | 79.4362 | 6566 | 317 | 6566 | 36 | 9 | 25.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 56.2806 | 41.3174 | 88.2353 | 79.4355 | 69 | 98 | 135 | 18 | 18 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0901 | 96.9697 | 99.2366 | 79.4349 | 128 | 4 | 130 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | map_l150_m2_e1 | * | 96.3274 | 97.0614 | 95.6045 | 79.4325 | 11164 | 338 | 11158 | 513 | 83 | 16.1793 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.4457 | 99.4809 | 99.4105 | 79.4316 | 4216 | 22 | 4216 | 25 | 7 | 28.0000 | |
| gduggal-bwafb | INDEL | I1_5 | HG002compoundhet | homalt | 52.2901 | 97.8723 | 35.6751 | 79.4310 | 322 | 7 | 325 | 586 | 578 | 98.6348 | |
| ckim-vqsr | INDEL | D16_PLUS | * | het | 97.9651 | 99.2719 | 96.6923 | 79.4267 | 3136 | 23 | 2894 | 99 | 69 | 69.6970 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.1113 | 93.6897 | 96.5766 | 79.4254 | 1069 | 72 | 1072 | 38 | 21 | 55.2632 | |
| hfeng-pmm1 | SNP | ti | map_l150_m0_e0 | * | 99.1145 | 98.9696 | 99.2598 | 79.4196 | 7780 | 81 | 7778 | 58 | 12 | 20.6897 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | homalt | 68.0723 | 66.6012 | 69.6099 | 79.4167 | 339 | 170 | 339 | 148 | 123 | 83.1081 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.5810 | 88.7218 | 92.5197 | 79.4165 | 236 | 30 | 235 | 19 | 7 | 36.8421 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | * | 98.3828 | 98.2715 | 98.4943 | 79.4152 | 3468 | 61 | 3467 | 53 | 28 | 52.8302 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 90.6644 | 83.7971 | 98.7578 | 79.4118 | 512 | 99 | 636 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | hetalt | 89.6552 | 81.2500 | 100.0000 | 79.4118 | 13 | 3 | 14 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 85.1064 | 88.8889 | 81.6327 | 79.4118 | 40 | 5 | 40 | 9 | 5 | 55.5556 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 79.4118 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.0360 | 94.2922 | 91.8129 | 79.4100 | 826 | 50 | 628 | 56 | 55 | 98.2143 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.7124 | 80.0288 | 97.0280 | 79.4096 | 1110 | 277 | 1110 | 34 | 4 | 11.7647 | |
| cchapple-custom | SNP | tv | map_l150_m2_e0 | * | 96.3013 | 97.0233 | 95.5899 | 79.4079 | 11017 | 338 | 11011 | 508 | 83 | 16.3386 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | homalt | 94.8819 | 93.4109 | 96.4000 | 79.4069 | 241 | 17 | 241 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | * | HG002compoundhet | het | 93.2853 | 98.3879 | 88.6859 | 79.4067 | 4028 | 66 | 3786 | 483 | 475 | 98.3437 | |
| jlack-gatk | SNP | * | map_siren | hetalt | 95.1220 | 96.2963 | 93.9759 | 79.4045 | 78 | 3 | 78 | 5 | 4 | 80.0000 | |
| jlack-gatk | SNP | tv | map_siren | hetalt | 95.1220 | 96.2963 | 93.9759 | 79.4045 | 78 | 3 | 78 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7904 | 99.6859 | 99.8951 | 79.4035 | 952 | 3 | 952 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.8506 | 97.7273 | 100.0000 | 79.4025 | 129 | 3 | 131 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.3214 | 95.6140 | 99.0909 | 79.4007 | 109 | 5 | 109 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e1 | hetalt | 95.2381 | 93.0233 | 97.5610 | 79.3970 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | hetalt | 95.2381 | 93.0233 | 97.5610 | 79.3970 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | * | 94.9238 | 93.3394 | 96.5629 | 79.3964 | 23599 | 1684 | 23599 | 840 | 407 | 48.4524 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 79.3893 | 0 | 0 | 0 | 54 | 1 | 1.8519 | ||
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 79.3893 | 0 | 0 | 0 | 54 | 1 | 1.8519 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 86.2745 | 91.6667 | 81.4815 | 79.3893 | 22 | 2 | 22 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_siren | homalt | 84.6161 | 81.5066 | 87.9724 | 79.3852 | 2164 | 491 | 2165 | 296 | 264 | 89.1892 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.3846 | 67 | 5 | 67 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 91.5350 | 93.7209 | 89.4487 | 79.3835 | 6239 | 418 | 6587 | 777 | 381 | 49.0347 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | het | 98.2208 | 99.1138 | 97.3437 | 79.3814 | 4362 | 39 | 4361 | 119 | 15 | 12.6050 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3051 | 100.0000 | 96.6667 | 79.3814 | 61 | 0 | 58 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 79.3814 | 37 | 0 | 40 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | het | 98.7761 | 99.4907 | 98.0716 | 79.3788 | 12307 | 63 | 12053 | 237 | 11 | 4.6414 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.4790 | 92.6941 | 71.1085 | 79.3774 | 609 | 48 | 603 | 245 | 24 | 9.7959 | |