PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38251-38300 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | ti | map_l125_m0_e0 | het | 95.6528 | 96.1152 | 95.1947 | 80.1979 | 7942 | 321 | 7944 | 401 | 119 | 29.6758 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 48.4716 | 84.3364 | 34.0089 | 80.1936 | 1093 | 203 | 1141 | 2214 | 143 | 6.4589 | |
| anovak-vg | SNP | tv | map_l150_m2_e0 | * | 79.2839 | 86.0062 | 73.5363 | 80.1925 | 9766 | 1589 | 9759 | 3512 | 838 | 23.8610 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8480 | 100.0000 | 99.6965 | 80.1924 | 657 | 0 | 657 | 2 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | map_l150_m2_e0 | het | 74.2562 | 59.1914 | 99.6072 | 80.1907 | 11917 | 8216 | 11918 | 47 | 8 | 17.0213 | |
| hfeng-pmm1 | INDEL | I1_5 | map_siren | het | 98.8017 | 98.0369 | 99.5786 | 80.1885 | 1648 | 33 | 1654 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 77.1866 | 71.6422 | 83.6612 | 80.1878 | 23811 | 9425 | 27896 | 5448 | 1746 | 32.0485 | |
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | * | 96.4836 | 95.9660 | 97.0068 | 80.1786 | 18603 | 782 | 18603 | 574 | 180 | 31.3589 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 80.1782 | 0 | 0 | 0 | 178 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 80.1782 | 0 | 0 | 0 | 178 | 0 | 0.0000 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.2539 | 96.1437 | 98.3900 | 80.1773 | 1097 | 44 | 1100 | 18 | 16 | 88.8889 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 79.0138 | 67.0974 | 96.0770 | 80.1746 | 2596 | 1273 | 2596 | 106 | 58 | 54.7170 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7183 | 99.4382 | 100.0000 | 80.1743 | 177 | 1 | 182 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0878 | 91.5423 | 98.9189 | 80.1715 | 184 | 17 | 183 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | * | 97.8795 | 98.4497 | 97.3158 | 80.1688 | 20194 | 318 | 20194 | 557 | 133 | 23.8779 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.5692 | 98.0237 | 84.1684 | 80.1687 | 1984 | 40 | 1999 | 376 | 4 | 1.0638 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 87.6588 | 80.7692 | 95.8333 | 80.1653 | 21 | 5 | 23 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_siren | * | 98.6998 | 98.2726 | 99.1307 | 80.1633 | 7282 | 128 | 7298 | 64 | 16 | 25.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | homalt | 54.6448 | 37.5981 | 99.9706 | 80.1633 | 3400 | 5643 | 3400 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | het | 41.8044 | 26.6036 | 97.5328 | 80.1621 | 1265 | 3490 | 1265 | 32 | 1 | 3.1250 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | het | 98.9959 | 99.4291 | 98.5665 | 80.1620 | 2264 | 13 | 2269 | 33 | 2 | 6.0606 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.1619 | 45 | 2 | 47 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l100_m1_e0 | het | 87.3398 | 78.8625 | 97.8592 | 80.1613 | 23613 | 6329 | 23496 | 514 | 414 | 80.5447 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 94.5554 | 91.1175 | 98.2630 | 80.1576 | 318 | 31 | 396 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.0356 | 96.9749 | 99.1197 | 80.1572 | 1122 | 35 | 1126 | 10 | 1 | 10.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.1712 | 97.1084 | 99.2574 | 80.1572 | 806 | 24 | 802 | 6 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | * | 95.4374 | 92.1053 | 99.0196 | 80.1556 | 105 | 9 | 101 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.4615 | 96.9697 | 100.0000 | 80.1527 | 128 | 4 | 130 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | map_l125_m2_e1 | het | 96.3352 | 96.5223 | 96.1488 | 80.1525 | 10186 | 367 | 10186 | 408 | 95 | 23.2843 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | homalt | 99.4879 | 99.7432 | 99.2340 | 80.1520 | 1165 | 3 | 1166 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.6464 | 97.8495 | 99.4565 | 80.1510 | 364 | 8 | 366 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | * | map_l150_m1_e0 | het | 98.9459 | 99.1510 | 98.7416 | 80.1493 | 19152 | 164 | 19146 | 244 | 49 | 20.0820 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 14.8148 | 80.1471 | 0 | 0 | 8 | 46 | 3 | 6.5217 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | het | 95.7265 | 91.8033 | 100.0000 | 80.1471 | 56 | 5 | 54 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 93.1964 | 89.2944 | 97.4551 | 80.1427 | 367 | 44 | 651 | 17 | 17 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 65.6250 | 58.3333 | 75.0000 | 80.1418 | 14 | 10 | 21 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | SNP | tv | map_l150_m1_e0 | homalt | 70.8865 | 54.9164 | 99.9539 | 80.1411 | 2167 | 1779 | 2167 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e0 | homalt | 94.8057 | 91.9112 | 97.8885 | 80.1409 | 1159 | 102 | 1159 | 25 | 8 | 32.0000 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | * | 97.3682 | 96.6752 | 98.0713 | 80.1400 | 20034 | 689 | 20034 | 394 | 141 | 35.7868 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.1150 | 100.0000 | 98.2456 | 80.1394 | 5 | 0 | 56 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | map_l125_m0_e0 | het | 98.8408 | 99.0802 | 98.6026 | 80.1354 | 8187 | 76 | 8185 | 116 | 25 | 21.5517 | |
| jlack-gatk | SNP | tv | map_l100_m1_e0 | het | 94.3447 | 99.3060 | 89.8556 | 80.1334 | 15310 | 107 | 15306 | 1728 | 90 | 5.2083 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 76.9231 | 90.9091 | 66.6667 | 80.1325 | 20 | 2 | 20 | 10 | 7 | 70.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 16.3986 | 10.1523 | 42.6230 | 80.1303 | 20 | 177 | 26 | 35 | 26 | 74.2857 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.7383 | 91.7031 | 97.9814 | 80.1296 | 630 | 57 | 631 | 13 | 8 | 61.5385 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.8136 | 95.7207 | 100.0000 | 80.1285 | 425 | 19 | 402 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.0968 | 96.9379 | 99.2838 | 80.1281 | 1108 | 35 | 1109 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6226 | 99.3415 | 99.9054 | 80.1278 | 1056 | 7 | 1056 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | het | 95.5522 | 95.3521 | 95.7532 | 80.1277 | 29521 | 1439 | 29559 | 1311 | 671 | 51.1823 | |
| ckim-dragen | INDEL | D16_PLUS | * | het | 97.5880 | 99.0820 | 96.1385 | 80.1270 | 3130 | 29 | 2888 | 116 | 38 | 32.7586 | |