PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38151-38200 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | homalt | 76.9231 | 66.6667 | 90.9091 | 80.3571 | 10 | 5 | 10 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 85.2814 | 84.5161 | 86.0606 | 80.3571 | 131 | 24 | 142 | 23 | 16 | 69.5652 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 24.0000 | 100.0000 | 13.6364 | 80.3571 | 3 | 0 | 3 | 19 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | het | 97.8706 | 99.5778 | 96.2209 | 80.3517 | 20048 | 85 | 19427 | 763 | 22 | 2.8834 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 42.3256 | 33.3333 | 57.9618 | 80.3504 | 89 | 178 | 91 | 66 | 2 | 3.0303 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.6124 | 99.6124 | 99.6124 | 80.3503 | 257 | 1 | 257 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | het | 94.4449 | 98.1175 | 91.0373 | 80.3474 | 15480 | 297 | 15429 | 1519 | 88 | 5.7933 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | hetalt | 96.3564 | 93.9394 | 98.9011 | 80.3456 | 93 | 6 | 90 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | tv | map_l150_m1_e0 | het | 98.7950 | 99.1650 | 98.4277 | 80.3450 | 6888 | 58 | 6886 | 110 | 20 | 18.1818 | |
| jlack-gatk | SNP | * | map_l125_m2_e1 | * | 96.2112 | 98.8920 | 93.6720 | 80.3444 | 46679 | 523 | 46673 | 3153 | 240 | 7.6118 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 97.7778 | 100.0000 | 95.6522 | 80.3419 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.3419 | 23 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.4281 | 96.1083 | 98.7847 | 80.3413 | 568 | 23 | 569 | 7 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | homalt | 95.0820 | 96.6667 | 93.5484 | 80.3383 | 87 | 3 | 87 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | homalt | 97.5460 | 95.7831 | 99.3750 | 80.3319 | 1272 | 56 | 1272 | 8 | 2 | 25.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | * | 45.6242 | 32.2702 | 77.8329 | 80.3319 | 941 | 1975 | 941 | 268 | 239 | 89.1791 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.3449 | 96.3190 | 98.3929 | 80.3302 | 1099 | 42 | 1102 | 18 | 16 | 88.8889 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 75.1094 | 82.2222 | 69.1293 | 80.3287 | 592 | 128 | 786 | 351 | 146 | 41.5954 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 71.6612 | 58.8235 | 91.6667 | 80.3279 | 40 | 28 | 11 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 80.3279 | 12 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | het | 96.2702 | 99.7104 | 93.0595 | 80.3258 | 7231 | 21 | 7160 | 534 | 11 | 2.0599 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | * | 95.0420 | 97.9501 | 92.3015 | 80.3208 | 16151 | 338 | 16102 | 1343 | 73 | 5.4356 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 61.5224 | 45.4545 | 95.1613 | 80.3175 | 25 | 30 | 59 | 3 | 3 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | het | 95.9987 | 96.7583 | 95.2510 | 80.3175 | 11969 | 401 | 11974 | 597 | 158 | 26.4657 | |
| gduggal-bwafb | INDEL | I1_5 | HG002complexvar | hetalt | 89.3217 | 83.8355 | 95.5763 | 80.3162 | 1447 | 279 | 821 | 38 | 37 | 97.3684 | |
| ckim-isaac | INDEL | * | map_siren | het | 87.7323 | 79.7249 | 97.5278 | 80.3155 | 3594 | 914 | 3590 | 91 | 35 | 38.4615 | |
| astatham-gatk | SNP | tv | map_l150_m2_e1 | * | 91.6416 | 84.8374 | 99.6324 | 80.3148 | 9758 | 1744 | 9756 | 36 | 13 | 36.1111 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4012 | 98.8095 | 100.0000 | 80.3121 | 166 | 2 | 164 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 69.9678 | 56.0261 | 93.1470 | 80.3055 | 1032 | 810 | 1033 | 76 | 17 | 22.3684 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | homalt | 47.1642 | 40.9326 | 55.6338 | 80.3051 | 79 | 114 | 79 | 63 | 60 | 95.2381 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 16.5768 | 23.8066 | 12.7153 | 80.3047 | 384 | 1229 | 406 | 2787 | 32 | 1.1482 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | het | 95.8851 | 93.1857 | 98.7455 | 80.3036 | 547 | 40 | 551 | 7 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | map_l125_m2_e0 | * | 96.1886 | 98.8828 | 93.6372 | 80.3034 | 46201 | 522 | 46195 | 3139 | 239 | 7.6139 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 69.8368 | 56.1644 | 92.3077 | 80.3030 | 41 | 32 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l150_m1_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 80.3030 | 13 | 2 | 13 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l150_m1_e0 | het | 97.4659 | 98.6591 | 96.3012 | 80.3004 | 19057 | 259 | 19058 | 732 | 68 | 9.2896 | |
| astatham-gatk | SNP | tv | map_l150_m2_e0 | * | 91.6536 | 84.8613 | 99.6277 | 80.3003 | 9636 | 1719 | 9634 | 36 | 13 | 36.1111 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7696 | 99.5402 | 100.0000 | 80.2993 | 3897 | 18 | 3897 | 0 | 0 | ||
| jli-custom | INDEL | * | map_siren | het | 98.8982 | 98.5359 | 99.2631 | 80.2992 | 4442 | 66 | 4445 | 33 | 6 | 18.1818 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m1_e0 | het | 54.2158 | 72.2222 | 43.3962 | 80.2974 | 13 | 5 | 23 | 30 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | het | 96.6769 | 93.8198 | 99.7135 | 80.2936 | 4873 | 321 | 4873 | 14 | 4 | 28.5714 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7225 | 97.5369 | 97.9087 | 80.2849 | 594 | 15 | 515 | 11 | 8 | 72.7273 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 80.2817 | 0 | 0 | 0 | 14 | 0 | 0.0000 | ||
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 80.2817 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 80.2817 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.7513 | 97.8022 | 99.7191 | 80.2770 | 356 | 8 | 355 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | * | 95.8904 | 92.1053 | 100.0000 | 80.2734 | 105 | 9 | 101 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.3294 | 96.1877 | 98.4985 | 80.2725 | 328 | 13 | 328 | 5 | 3 | 60.0000 | |
| ckim-dragen | SNP | * | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 80.2721 | 29 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 80.2721 | 29 | 1 | 29 | 0 | 0 | ||