PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37701-37750 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 80.9524 | 48 | 1 | 48 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | * | het | 80.5941 | 68.7559 | 97.3566 | 80.9524 | 2172 | 987 | 2173 | 59 | 43 | 72.8814 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 80.9524 | 7 | 1 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 80.9524 | 7 | 1 | 4 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 16 | 0 | 16 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 16 | 0 | 16 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 80.9524 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 80.9524 | 12 | 18 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 80.9524 | 3 | 1 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 11.5385 | 6.1224 | 100.0000 | 80.9524 | 3 | 46 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | homalt | 15.3846 | 8.3333 | 100.0000 | 80.9524 | 1 | 11 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 56.7901 | 56.0976 | 57.5000 | 80.9524 | 23 | 18 | 23 | 17 | 16 | 94.1176 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.2879 | 92.8692 | 93.7104 | 80.9504 | 87714 | 6735 | 88189 | 5919 | 5201 | 87.8696 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.4231 | 99.8069 | 99.0421 | 80.9489 | 517 | 1 | 517 | 5 | 4 | 80.0000 | |
| hfeng-pmm1 | SNP | ti | map_l150_m0_e0 | het | 98.8393 | 98.5874 | 99.0925 | 80.9472 | 5025 | 72 | 5023 | 46 | 8 | 17.3913 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 86.1423 | 94.2623 | 79.3103 | 80.9461 | 115 | 7 | 115 | 30 | 20 | 66.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.8619 | 95.7143 | 94.0246 | 80.9444 | 1273 | 57 | 1070 | 68 | 57 | 83.8235 | |
| anovak-vg | INDEL | * | map_l100_m2_e0 | homalt | 76.7170 | 87.3910 | 68.3667 | 80.9419 | 1102 | 159 | 1126 | 521 | 485 | 93.0902 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.0870 | 99.1898 | 97.0085 | 80.9382 | 9059 | 74 | 9177 | 283 | 13 | 4.5936 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.0870 | 99.1898 | 97.0085 | 80.9382 | 9059 | 74 | 9177 | 283 | 13 | 4.5936 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e0 | het | 97.4100 | 95.9022 | 98.9660 | 80.9349 | 1334 | 57 | 1340 | 14 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.7471 | 93.6170 | 93.8776 | 80.9339 | 44 | 3 | 46 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3513 | 99.2593 | 99.4434 | 80.9339 | 536 | 4 | 536 | 3 | 2 | 66.6667 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.6785 | 95.6573 | 97.7218 | 80.9284 | 815 | 37 | 815 | 19 | 14 | 73.6842 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.9278 | 74 | 0 | 74 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 69.4883 | 82.5826 | 59.9782 | 80.9276 | 550 | 116 | 550 | 367 | 359 | 97.8202 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 69.4883 | 82.5826 | 59.9782 | 80.9276 | 550 | 116 | 550 | 367 | 359 | 97.8202 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0431 | 99.5192 | 98.5714 | 80.9264 | 207 | 1 | 207 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5915 | 97.2222 | 100.0000 | 80.9259 | 105 | 3 | 103 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | het | 98.1142 | 97.9247 | 98.3045 | 80.9258 | 2784 | 59 | 2783 | 48 | 1 | 2.0833 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 53.4225 | 56.2232 | 50.8876 | 80.9255 | 131 | 102 | 86 | 83 | 33 | 39.7590 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m1_e0 | * | 97.8601 | 96.5354 | 99.2218 | 80.9241 | 2034 | 73 | 2040 | 16 | 1 | 6.2500 | |
| cchapple-custom | INDEL | D6_15 | map_siren | * | 94.5230 | 93.5167 | 95.5513 | 80.9225 | 476 | 33 | 494 | 23 | 10 | 43.4783 | |
| qzeng-custom | SNP | ti | map_l100_m2_e1 | het | 87.6458 | 79.3605 | 97.8627 | 80.9215 | 24570 | 6390 | 24451 | 534 | 415 | 77.7154 | |
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | homalt | 99.2665 | 99.2665 | 99.2665 | 80.9205 | 1218 | 9 | 1218 | 9 | 4 | 44.4444 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | het | 76.0958 | 77.0370 | 75.1773 | 80.9202 | 104 | 31 | 106 | 35 | 25 | 71.4286 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | * | 67.2515 | 53.6756 | 90.0196 | 80.9186 | 460 | 397 | 460 | 51 | 46 | 90.1961 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | * | 67.5902 | 64.0472 | 71.5481 | 80.9182 | 326 | 183 | 342 | 136 | 91 | 66.9118 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5773 | 99.4932 | 99.6616 | 80.9170 | 589 | 3 | 589 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.6455 | 92.3077 | 95.0226 | 80.9154 | 228 | 19 | 210 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I6_15 | map_siren | * | 95.8124 | 93.7705 | 97.9452 | 80.9150 | 286 | 19 | 286 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.7638 | 98.6660 | 89.3256 | 80.9138 | 1997 | 27 | 2000 | 239 | 13 | 5.4393 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.4289 | 93.6983 | 89.2667 | 80.9128 | 907 | 61 | 840 | 101 | 75 | 74.2574 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2453 | 98.8722 | 99.6212 | 80.9111 | 263 | 3 | 263 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2341 | 97.7771 | 98.6954 | 80.9079 | 6730 | 153 | 6733 | 89 | 29 | 32.5843 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9883 | 95.6391 | 94.3463 | 80.9074 | 1272 | 58 | 1068 | 64 | 58 | 90.6250 | |
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | het | 98.8251 | 98.5390 | 99.1129 | 80.9036 | 7824 | 116 | 7821 | 70 | 11 | 15.7143 | |
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | het | 96.3303 | 95.7074 | 96.9615 | 80.9022 | 11839 | 531 | 11839 | 371 | 130 | 35.0404 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4329 | 98.8722 | 100.0000 | 80.9005 | 263 | 3 | 263 | 0 | 0 | ||