PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37401-37450 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.2977 | 49 | 0 | 49 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | map_l100_m0_e0 | het | 93.1046 | 97.6656 | 88.9506 | 81.2913 | 20710 | 495 | 20488 | 2545 | 125 | 4.9116 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.2441 | 11.6279 | 78.1609 | 81.2903 | 70 | 532 | 68 | 19 | 19 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8679 | 98.4962 | 99.2424 | 81.2899 | 262 | 4 | 262 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | homalt | 57.9932 | 99.4169 | 40.9364 | 81.2893 | 682 | 4 | 682 | 984 | 980 | 99.5935 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.6501 | 74.6171 | 72.7079 | 81.2886 | 682 | 232 | 682 | 256 | 1 | 0.3906 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1501 | 98.3146 | 100.0000 | 81.2834 | 175 | 3 | 175 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l150_m0_e0 | * | 98.9345 | 99.2367 | 98.6341 | 81.2825 | 7801 | 60 | 7799 | 108 | 13 | 12.0370 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8071 | 96.3738 | 99.2837 | 81.2818 | 691 | 26 | 693 | 5 | 1 | 20.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 11.8421 | 81.2808 | 0 | 0 | 9 | 67 | 3 | 4.4776 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m1_e0 | homalt | 96.9151 | 95.4545 | 98.4211 | 81.2808 | 189 | 9 | 187 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | * | 92.1558 | 96.2756 | 88.3741 | 81.2786 | 29469 | 1140 | 29091 | 3827 | 280 | 7.3164 | |
| jlack-gatk | SNP | tv | map_l100_m2_e0 | het | 94.4020 | 99.3218 | 89.9466 | 81.2769 | 15670 | 107 | 15666 | 1751 | 90 | 5.1399 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.9996 | 94.3320 | 97.7273 | 81.2766 | 233 | 14 | 215 | 5 | 3 | 60.0000 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | * | 98.4884 | 99.1375 | 97.8477 | 81.2755 | 4138 | 36 | 4137 | 91 | 10 | 10.9890 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | * | 98.4686 | 98.1555 | 98.7838 | 81.2749 | 7716 | 145 | 7716 | 95 | 36 | 37.8947 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | homalt | 92.3972 | 86.9509 | 98.5714 | 81.2719 | 673 | 101 | 897 | 13 | 11 | 84.6154 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.5081 | 95.9488 | 99.1189 | 81.2706 | 450 | 19 | 450 | 4 | 2 | 50.0000 | |
| jlack-gatk | SNP | tv | map_l125_m2_e0 | * | 95.1584 | 98.8841 | 91.7032 | 81.2684 | 16305 | 184 | 16303 | 1475 | 90 | 6.1017 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.9595 | 93.9583 | 98.0477 | 81.2678 | 451 | 29 | 452 | 9 | 7 | 77.7778 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.8285 | 93.5953 | 98.1707 | 81.2678 | 643 | 44 | 644 | 12 | 6 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | map_siren | homalt | 99.6154 | 99.6575 | 99.5734 | 81.2660 | 1164 | 4 | 1167 | 5 | 4 | 80.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.4476 | 97.8775 | 99.0244 | 81.2649 | 4058 | 88 | 4060 | 40 | 19 | 47.5000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3599 | 98.9071 | 99.8168 | 81.2629 | 543 | 6 | 545 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | het | 76.6942 | 71.0212 | 83.3520 | 81.2570 | 20822 | 8496 | 20798 | 4154 | 134 | 3.2258 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 71.6485 | 93.5583 | 58.0534 | 81.2561 | 3965 | 273 | 4044 | 2922 | 58 | 1.9849 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | het | 76.8097 | 71.1707 | 83.4191 | 81.2554 | 21095 | 8545 | 21070 | 4188 | 136 | 3.2474 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 95.1002 | 96.1712 | 94.0529 | 81.2552 | 427 | 17 | 427 | 27 | 22 | 81.4815 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 81.2500 | 12 | 3 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.3043 | 95.4545 | 87.5000 | 81.2500 | 21 | 1 | 21 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.2500 | 12 | 0 | 12 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.2500 | 12 | 0 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 79.4582 | 83.0189 | 76.1905 | 81.2500 | 88 | 18 | 80 | 25 | 25 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.8885 | 77.2727 | 96.6667 | 81.2500 | 34 | 10 | 29 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.2500 | 12 | 1 | 12 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.2500 | 12 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7183 | 99.4382 | 100.0000 | 81.2500 | 177 | 1 | 177 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 89.1445 | 83.7838 | 95.2381 | 81.2500 | 31 | 6 | 40 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.7143 | 75.0000 | 100.0000 | 81.2500 | 3 | 1 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.1176 | 100.0000 | 88.8889 | 81.2500 | 15 | 0 | 16 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7183 | 99.4382 | 100.0000 | 81.2500 | 177 | 1 | 177 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.7122 | 93.6170 | 95.8333 | 81.2500 | 44 | 3 | 46 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 81.2500 | 3 | 6 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 81.2500 | 0 | 0 | 0 | 3 | 3 | 100.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 31.5789 | 81.2500 | 0 | 0 | 36 | 78 | 13 | 16.6667 | |