PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37251-37300 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 81.4815 | 5 | 7 | 5 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_siren | * | 97.3853 | 95.4077 | 99.4467 | 81.4805 | 2867 | 138 | 2876 | 16 | 5 | 31.2500 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 28.5443 | 93.7568 | 16.8348 | 81.4803 | 856 | 57 | 901 | 4451 | 48 | 1.0784 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.9030 | 98.9865 | 98.8196 | 81.4803 | 586 | 6 | 586 | 7 | 6 | 85.7143 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.9441 | 99.3912 | 87.2825 | 81.4778 | 653 | 4 | 652 | 95 | 78 | 82.1053 | |
| jpowers-varprowl | INDEL | D1_5 | map_siren | * | 94.5668 | 93.7093 | 95.4401 | 81.4755 | 3307 | 222 | 3307 | 158 | 114 | 72.1519 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 80.1599 | 93.1385 | 70.3560 | 81.4743 | 2932 | 216 | 2905 | 1224 | 64 | 5.2288 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4810 | 99.1533 | 99.8108 | 81.4724 | 1054 | 9 | 1055 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8483 | 99.0025 | 98.6945 | 81.4707 | 397 | 4 | 378 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | homalt | 70.9278 | 69.3548 | 72.5738 | 81.4699 | 172 | 76 | 172 | 65 | 60 | 92.3077 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | het | 99.0779 | 98.9292 | 99.2271 | 81.4696 | 1663 | 18 | 1669 | 13 | 1 | 7.6923 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.2393 | 84.6154 | 8.3737 | 81.4696 | 121 | 22 | 121 | 1324 | 15 | 1.1329 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | het | 87.9050 | 79.8638 | 97.7467 | 81.4691 | 37056 | 9343 | 36699 | 846 | 656 | 77.5414 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3401 | 99.4350 | 99.2453 | 81.4685 | 528 | 3 | 526 | 4 | 2 | 50.0000 | |
| ckim-gatk | SNP | ti | map_l100_m2_e0 | het | 92.8437 | 88.2960 | 97.8852 | 81.4673 | 27038 | 3584 | 27031 | 584 | 62 | 10.6164 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3829 | 99.4334 | 99.3324 | 81.4625 | 6844 | 39 | 6844 | 46 | 14 | 30.4348 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.5612 | 96.1290 | 95.0000 | 81.4600 | 149 | 6 | 152 | 8 | 7 | 87.5000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 45.0000 | 29.3478 | 96.4286 | 81.4570 | 27 | 65 | 27 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.4570 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.4570 | 28 | 2 | 28 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6987 | 99.3992 | 100.0000 | 81.4570 | 1489 | 9 | 1489 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l100_m2_e1 | het | 92.9104 | 88.4076 | 97.8964 | 81.4552 | 27371 | 3589 | 27364 | 588 | 62 | 10.5442 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.5254 | 97.6501 | 99.4164 | 81.4523 | 1870 | 45 | 1874 | 11 | 1 | 9.0909 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | het | 73.2883 | 63.3333 | 86.9565 | 81.4516 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 100.0000 | 100.0000 | 100.0000 | 81.4499 | 87 | 0 | 87 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.2955 | 97.1910 | 99.4253 | 81.4499 | 173 | 5 | 173 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | het | 96.1124 | 95.8014 | 96.4254 | 81.4447 | 18505 | 811 | 18505 | 686 | 205 | 29.8834 | |
| ckim-gatk | INDEL | D1_5 | map_siren | homalt | 99.4864 | 99.4007 | 99.5723 | 81.4444 | 1161 | 7 | 1164 | 5 | 4 | 80.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_siren | homalt | 99.4864 | 99.4007 | 99.5723 | 81.4444 | 1161 | 7 | 1164 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2603 | 95.9459 | 98.6111 | 81.4433 | 71 | 3 | 71 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | * | 22.9885 | 13.3333 | 83.3333 | 81.4433 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | het | 74.7073 | 63.0435 | 91.6667 | 81.4433 | 29 | 17 | 33 | 3 | 3 | 100.0000 | |
| qzeng-custom | SNP | * | map_l100_m2_e1 | het | 87.9932 | 79.9949 | 97.7685 | 81.4422 | 37516 | 9382 | 37154 | 848 | 656 | 77.3585 | |
| jli-custom | INDEL | I1_5 | map_l100_m1_e0 | * | 99.2513 | 98.9544 | 99.5499 | 81.4397 | 1325 | 14 | 1327 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | het | 82.8019 | 79.7203 | 86.1314 | 81.4363 | 114 | 29 | 118 | 19 | 17 | 89.4737 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 91.3695 | 99.3801 | 84.5540 | 81.4321 | 28534 | 178 | 27026 | 4937 | 134 | 2.7142 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.3695 | 99.3801 | 84.5540 | 81.4321 | 28534 | 178 | 27026 | 4937 | 134 | 2.7142 | |
| jlack-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 81.4286 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 81.4286 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 81.4286 | 0 | 0 | 0 | 13 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | I1_5 | map_siren | het | 73.5105 | 78.9411 | 68.7790 | 81.4258 | 1327 | 354 | 1335 | 606 | 517 | 85.3135 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.6962 | 98.4278 | 82.3875 | 81.4243 | 2379 | 38 | 2381 | 509 | 127 | 24.9509 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.4229 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m2_e0 | homalt | 55.5756 | 38.4849 | 99.9718 | 81.4225 | 3546 | 5668 | 3546 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | * | 77.1277 | 67.9245 | 89.2157 | 81.4208 | 36 | 17 | 91 | 11 | 9 | 81.8182 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.8280 | 96.1240 | 99.5935 | 81.4199 | 248 | 10 | 245 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.2302 | 99.3206 | 84.3587 | 81.4184 | 14472 | 99 | 13726 | 2545 | 73 | 2.8684 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.2302 | 99.3206 | 84.3587 | 81.4184 | 14472 | 99 | 13726 | 2545 | 73 | 2.8684 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.1243 | 90.5963 | 97.9381 | 81.4176 | 395 | 41 | 380 | 8 | 3 | 37.5000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 46.1295 | 40.0000 | 54.4776 | 81.4147 | 62 | 93 | 73 | 61 | 39 | 63.9344 | |