PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36951-37000 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 81.8182 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 81.8182 | 2 | 2 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | het | 57.1429 | 66.6667 | 50.0000 | 81.8182 | 2 | 1 | 2 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | het | 36.3636 | 22.2222 | 100.0000 | 81.8182 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 81.8182 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 81.8182 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 81.8182 | 2 | 4 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 81.8182 | 0 | 23 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | * | 27.2727 | 16.6667 | 75.0000 | 81.8182 | 1 | 5 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 81.8182 | 0 | 3 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 81.8182 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | het | 72.5049 | 63.3333 | 84.7826 | 81.8182 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | * | 76.6354 | 64.3939 | 94.6237 | 81.8182 | 170 | 94 | 176 | 10 | 9 | 90.0000 | |
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e1 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 81.8182 | 0 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 81.8182 | 48 | 1 | 48 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 15.3846 | 100.0000 | 8.3333 | 81.8182 | 1 | 0 | 1 | 11 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 81.8182 | 1 | 0 | 0 | 18 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 81.8182 | 0 | 47 | 0 | 2 | 0 | 0.0000 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 7.1006 | 3.7267 | 75.0000 | 81.8182 | 6 | 155 | 6 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 81.8182 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 81.8182 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_siren | hetalt | 54.6410 | 38.7097 | 92.8571 | 81.8182 | 12 | 19 | 13 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.8182 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 81.8182 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | homalt | 98.9792 | 98.7775 | 99.1817 | 81.8155 | 1212 | 15 | 1212 | 10 | 5 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | hetalt | 80.5939 | 70.0444 | 94.8847 | 81.8132 | 947 | 405 | 946 | 51 | 50 | 98.0392 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002compoundhet | het | 88.3547 | 89.0588 | 87.6616 | 81.8124 | 757 | 93 | 746 | 105 | 65 | 61.9048 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | homalt | 78.9281 | 98.4802 | 65.8537 | 81.8115 | 324 | 5 | 324 | 168 | 152 | 90.4762 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 37.9771 | 33.2554 | 44.2615 | 81.8105 | 711 | 1427 | 860 | 1083 | 11 | 1.0157 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1121 | 98.7531 | 99.4737 | 81.8095 | 396 | 5 | 378 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | map_l100_m1_e0 | homalt | 99.1863 | 99.3480 | 99.0252 | 81.8088 | 1219 | 8 | 1219 | 12 | 6 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.1621 | 97.7230 | 87.2000 | 81.7983 | 515 | 12 | 436 | 64 | 51 | 79.6875 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 55.3143 | 76.7267 | 43.2455 | 81.7971 | 511 | 155 | 509 | 668 | 383 | 57.3353 | |