PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36801-36850 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | map_siren | * | 81.1872 | 77.0138 | 85.8388 | 82.0071 | 392 | 117 | 394 | 65 | 53 | 81.5385 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8550 | 98.1557 | 99.5643 | 82.0071 | 479 | 9 | 457 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m0_e0 | het | 93.5961 | 89.6226 | 97.9381 | 82.0037 | 95 | 11 | 95 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | homalt | 87.7193 | 83.3333 | 92.5926 | 82.0000 | 10 | 2 | 25 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 83.7209 | 87.8049 | 80.0000 | 82.0000 | 36 | 5 | 36 | 9 | 4 | 44.4444 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 82.0000 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 82.0000 | 18 | 2 | 18 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 28.0702 | 16.6667 | 88.8889 | 82.0000 | 2 | 10 | 8 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.3805 | 89.3617 | 97.7778 | 82.0000 | 42 | 5 | 44 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | het | 80.3653 | 73.3333 | 88.8889 | 82.0000 | 22 | 8 | 24 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.8218 | 9.7826 | 100.0000 | 82.0000 | 9 | 83 | 9 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 82.0000 | 0 | 0 | 0 | 9 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | homalt | 71.5076 | 67.7588 | 75.6955 | 81.9979 | 517 | 246 | 517 | 166 | 143 | 86.1446 | |
| gduggal-snapfb | INDEL | * | map_siren | * | 93.6644 | 92.0513 | 95.3350 | 81.9963 | 6821 | 589 | 6887 | 337 | 103 | 30.5638 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.9951 | 74 | 0 | 74 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3232 | 99.1554 | 99.4915 | 81.9902 | 587 | 5 | 587 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | * | 97.5124 | 96.2672 | 98.7903 | 81.9898 | 490 | 19 | 490 | 6 | 2 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5314 | 100.0000 | 99.0672 | 81.9892 | 531 | 0 | 531 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | het | 91.6040 | 98.1446 | 85.8808 | 81.9878 | 7088 | 134 | 7074 | 1163 | 45 | 3.8693 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 81.9824 | 369 | 0 | 369 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 81.9820 | 0 | 0 | 0 | 20 | 0 | 0.0000 | ||
| jli-custom | SNP | * | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.9820 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | * | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.9820 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.9820 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.9820 | 20 | 0 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.9820 | 20 | 2 | 20 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_siren | hetalt | 77.9122 | 68.6869 | 90.0000 | 81.9820 | 68 | 31 | 18 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | ti | map_l150_m0_e0 | * | 98.8419 | 98.8169 | 98.8670 | 81.9794 | 7768 | 93 | 7766 | 89 | 19 | 21.3483 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 79.5890 | 75.9398 | 83.6066 | 81.9793 | 202 | 64 | 204 | 40 | 39 | 97.5000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0071 | 83.0189 | 91.3978 | 81.9767 | 88 | 18 | 85 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | het | 68.5015 | 94.1176 | 53.8462 | 81.9757 | 16 | 1 | 56 | 48 | 36 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8254 | 96.8254 | 96.8254 | 81.9742 | 122 | 4 | 122 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.0881 | 92.2652 | 86.1224 | 81.9720 | 334 | 28 | 211 | 34 | 34 | 100.0000 | |
| cchapple-custom | SNP | * | map_l150_m2_e1 | het | 95.7763 | 96.9945 | 94.5883 | 81.9692 | 19751 | 612 | 19768 | 1131 | 246 | 21.7507 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 64.4675 | 51.4286 | 86.3636 | 81.9672 | 18 | 17 | 19 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4702 | 93.2292 | 95.7447 | 81.9664 | 358 | 26 | 360 | 16 | 12 | 75.0000 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | * | 98.6509 | 98.9938 | 98.3103 | 81.9664 | 4132 | 42 | 4131 | 71 | 6 | 8.4507 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 81.9648 | 369 | 0 | 369 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.4197 | 99.6124 | 99.2278 | 81.9638 | 257 | 1 | 257 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 72.3381 | 57.0859 | 98.7121 | 81.9630 | 2147 | 1614 | 2146 | 28 | 19 | 67.8571 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 72.3381 | 57.0859 | 98.7121 | 81.9630 | 2147 | 1614 | 2146 | 28 | 19 | 67.8571 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m0_e0 | het | 51.5385 | 34.8958 | 98.5294 | 81.9629 | 67 | 125 | 67 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | homalt | 96.9490 | 98.6301 | 95.3243 | 81.9616 | 1152 | 16 | 1264 | 62 | 47 | 75.8065 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | homalt | 98.7267 | 99.0177 | 98.4375 | 81.9591 | 504 | 5 | 504 | 8 | 4 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 53.3873 | 61.5385 | 47.1429 | 81.9588 | 16 | 10 | 33 | 37 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | * | 97.6365 | 97.2403 | 98.0360 | 81.9551 | 1797 | 51 | 1797 | 36 | 17 | 47.2222 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2973 | 97.2973 | 97.2973 | 81.9512 | 72 | 2 | 72 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.8037 | 98.1533 | 89.8233 | 81.9505 | 44858 | 844 | 44997 | 5098 | 525 | 10.2982 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.8037 | 98.1533 | 89.8233 | 81.9505 | 44858 | 844 | 44997 | 5098 | 525 | 10.2982 | |
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | het | 94.5411 | 97.6568 | 91.6179 | 81.9499 | 17838 | 428 | 17707 | 1620 | 106 | 6.5432 | |