PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36651-36700 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | homalt | 99.2587 | 99.2974 | 99.2200 | 82.2364 | 1272 | 9 | 1272 | 10 | 4 | 40.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.0971 | 95.6607 | 98.5772 | 82.2319 | 485 | 22 | 485 | 7 | 5 | 71.4286 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 82.8907 | 73.1218 | 95.6723 | 82.2308 | 2258 | 830 | 2277 | 103 | 19 | 18.4466 | |
| qzeng-custom | SNP | * | map_l125_m1_e0 | * | 83.4865 | 72.9742 | 97.5374 | 82.2302 | 33077 | 12250 | 32716 | 826 | 701 | 84.8668 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | het | 97.8087 | 97.6911 | 97.9266 | 82.2279 | 1227 | 29 | 1228 | 26 | 9 | 34.6154 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7468 | 98.3607 | 99.1361 | 82.2265 | 480 | 8 | 459 | 4 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | het | 63.7838 | 47.4849 | 97.1193 | 82.2238 | 236 | 261 | 236 | 7 | 4 | 57.1429 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 82.2222 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2222 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 85.7143 | 78.9474 | 93.7500 | 82.2222 | 15 | 4 | 15 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 82.2222 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 82.2222 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l100_m2_e0 | homalt | 98.2022 | 97.4623 | 98.9533 | 82.2165 | 1229 | 32 | 1229 | 13 | 9 | 69.2308 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | het | 99.2553 | 99.3852 | 99.1259 | 82.2139 | 2263 | 14 | 2268 | 20 | 1 | 5.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2134 | 45 | 0 | 45 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_siren | * | 98.1089 | 96.8566 | 99.3939 | 82.2134 | 493 | 16 | 492 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.3257 | 95.6607 | 97.0000 | 82.2127 | 485 | 22 | 485 | 15 | 15 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.2093 | 152 | 3 | 153 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.2086 | 27 | 4 | 29 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 82.2064 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.2606 | 99.4444 | 99.0775 | 82.2062 | 537 | 3 | 537 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.0614 | 92.4309 | 97.8462 | 82.1967 | 635 | 52 | 636 | 14 | 12 | 85.7143 | |
| qzeng-custom | INDEL | I1_5 | map_siren | * | 88.5587 | 81.9301 | 96.3544 | 82.1964 | 2462 | 543 | 2643 | 100 | 24 | 24.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 89.1825 | 84.1463 | 94.8598 | 82.1963 | 207 | 39 | 203 | 11 | 9 | 81.8182 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 82.1918 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 82.1918 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 82.1918 | 12 | 10 | 13 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.1517 | 13.2826 | 66.6667 | 82.1918 | 157 | 1025 | 156 | 78 | 60 | 76.9231 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 75.3363 | 63.6364 | 92.3077 | 82.1918 | 28 | 16 | 12 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4888 | 99.5012 | 99.4764 | 82.1911 | 399 | 2 | 380 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.1470 | 91.9890 | 86.4754 | 82.1898 | 333 | 29 | 211 | 33 | 33 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 77.8626 | 66.2338 | 94.4444 | 82.1887 | 1428 | 728 | 1428 | 84 | 26 | 30.9524 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | homalt | 52.1579 | 35.2833 | 99.9692 | 82.1867 | 3251 | 5963 | 3251 | 1 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 93.3333 | 96.5517 | 90.3226 | 82.1839 | 28 | 1 | 28 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | * | map_siren | homalt | 97.0575 | 94.9906 | 99.2163 | 82.1825 | 2522 | 133 | 2532 | 20 | 9 | 45.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 83.2248 | 80.8271 | 85.7692 | 82.1796 | 215 | 51 | 223 | 37 | 34 | 91.8919 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 45.0000 | 40.9091 | 50.0000 | 82.1782 | 9 | 13 | 9 | 9 | 8 | 88.8889 | |
| ckim-isaac | SNP | tv | map_l150_m0_e0 | * | 66.0468 | 49.3531 | 99.8062 | 82.1762 | 2060 | 2114 | 2060 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4371 | 99.6241 | 99.2509 | 82.1762 | 265 | 1 | 265 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3536 | 99.6296 | 99.0792 | 82.1733 | 538 | 2 | 538 | 5 | 4 | 80.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.3377 | 99.4935 | 99.1825 | 82.1709 | 4125 | 21 | 4125 | 34 | 6 | 17.6471 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.1705 | 23 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 82.1705 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e1 | * | 96.2343 | 95.9857 | 96.4842 | 82.1695 | 1339 | 56 | 2168 | 79 | 60 | 75.9494 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0097 | 97.9592 | 96.0784 | 82.1678 | 48 | 1 | 49 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | homalt | 90.3226 | 82.3529 | 100.0000 | 82.1656 | 28 | 6 | 28 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | * | 94.2056 | 97.3045 | 91.2979 | 82.1654 | 12418 | 344 | 12317 | 1174 | 66 | 5.6218 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.5666 | 98.2288 | 91.1677 | 82.1653 | 1331 | 24 | 1218 | 118 | 65 | 55.0847 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 78.5739 | 85.5355 | 72.6602 | 82.1649 | 2324 | 393 | 2756 | 1037 | 513 | 49.4696 | |
| astatham-gatk | SNP | * | map_l125_m0_e0 | het | 89.5045 | 81.3803 | 99.4306 | 82.1625 | 10306 | 2358 | 10303 | 59 | 18 | 30.5085 | |