PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36351-36400 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.8935 | 85.7610 | 94.4444 | 82.5788 | 524 | 87 | 527 | 31 | 29 | 93.5484 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.5740 | 152 | 3 | 153 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | het | 97.2721 | 98.6880 | 95.8962 | 82.5739 | 12712 | 169 | 12712 | 544 | 123 | 22.6103 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 89.8295 | 94.2654 | 85.7923 | 82.5729 | 1726 | 105 | 1727 | 286 | 3 | 1.0490 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 58.3890 | 51.6129 | 67.2131 | 82.5714 | 80 | 75 | 82 | 40 | 40 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 17.5000 | 82.5708 | 0 | 0 | 14 | 66 | 6 | 9.0909 | |
| hfeng-pmm1 | INDEL | * | map_l100_m0_e0 | homalt | 98.5337 | 99.0177 | 98.0545 | 82.5704 | 504 | 5 | 504 | 10 | 4 | 40.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3143 | 96.0145 | 98.6499 | 82.5698 | 1060 | 44 | 1096 | 15 | 12 | 80.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 96.7824 | 97.3368 | 96.2343 | 82.5675 | 1864 | 51 | 1840 | 72 | 9 | 12.5000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.8281 | 98.0620 | 99.6063 | 82.5669 | 253 | 5 | 253 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6522 | 94.2857 | 97.0588 | 82.5641 | 33 | 2 | 33 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 78.7591 | 65.2015 | 99.4350 | 82.5616 | 356 | 190 | 352 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8741 | 96.4613 | 99.3289 | 82.5609 | 736 | 27 | 740 | 5 | 1 | 20.0000 | |
| ciseli-custom | SNP | tv | map_l150_m2_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.5581 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.5581 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 82.5581 | 0 | 0 | 0 | 30 | 0 | 0.0000 | ||
| jlack-gatk | SNP | ti | map_l100_m0_e0 | hetalt | 89.6552 | 92.8571 | 86.6667 | 82.5581 | 13 | 1 | 13 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.9639 | 78.4943 | 97.4823 | 82.5580 | 2471 | 677 | 2478 | 64 | 33 | 51.5625 | |
| astatham-gatk | SNP | tv | map_l125_m0_e0 | het | 90.1921 | 82.6403 | 99.2629 | 82.5538 | 3637 | 764 | 3636 | 27 | 5 | 18.5185 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | * | 98.7920 | 99.4784 | 98.1149 | 82.5537 | 7820 | 41 | 7703 | 148 | 7 | 4.7297 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.3281 | 98.1481 | 96.5217 | 82.5526 | 530 | 10 | 888 | 32 | 29 | 90.6250 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0291 | 98.8372 | 99.2218 | 82.5526 | 255 | 3 | 255 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e1 | homalt | 67.9194 | 93.5860 | 53.3011 | 82.5513 | 321 | 22 | 331 | 290 | 267 | 92.0690 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | * | 97.7940 | 96.5393 | 99.0817 | 82.5509 | 2148 | 77 | 2158 | 20 | 1 | 5.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 82.5503 | 27 | 1 | 26 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | homalt | 95.6522 | 93.6813 | 97.7077 | 82.5500 | 341 | 23 | 341 | 8 | 1 | 12.5000 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 54.1379 | 40.1544 | 83.0645 | 82.5475 | 208 | 310 | 206 | 42 | 33 | 78.5714 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 70.0000 | 91.3043 | 56.7568 | 82.5472 | 21 | 2 | 21 | 16 | 10 | 62.5000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 82.5459 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e0 | * | 77.9188 | 64.0796 | 99.3822 | 82.5443 | 31374 | 17587 | 31369 | 195 | 15 | 7.6923 | |
| egarrison-hhga | INDEL | * | map_l100_m1_e0 | homalt | 98.5306 | 98.3700 | 98.6917 | 82.5435 | 1207 | 20 | 1207 | 16 | 9 | 56.2500 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | * | 93.2170 | 87.6733 | 99.5090 | 82.5398 | 6892 | 969 | 6890 | 34 | 15 | 44.1176 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.5000 | 100.0000 | 45.4545 | 82.5397 | 6 | 0 | 5 | 6 | 1 | 16.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | homalt | 97.3180 | 97.6923 | 96.9466 | 82.5333 | 127 | 3 | 127 | 4 | 2 | 50.0000 | |
| ckim-dragen | SNP | * | map_l250_m1_e0 | homalt | 99.1258 | 98.9850 | 99.2671 | 82.5332 | 2438 | 25 | 2438 | 18 | 15 | 83.3333 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e0 | het | 96.1913 | 95.9023 | 96.4821 | 82.5326 | 19308 | 825 | 19308 | 704 | 206 | 29.2614 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 62.3434 | 46.3628 | 95.1351 | 82.5307 | 529 | 612 | 528 | 27 | 19 | 70.3704 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.5301 | 27 | 4 | 29 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 84.6154 | 95.6522 | 75.8621 | 82.5301 | 22 | 1 | 22 | 7 | 6 | 85.7143 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e1 | * | 92.4051 | 96.3396 | 88.7794 | 82.5294 | 31031 | 1179 | 30628 | 3871 | 287 | 7.4141 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.8495 | 96.4010 | 99.3421 | 82.5287 | 750 | 28 | 755 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7468 | 98.3607 | 99.1361 | 82.5283 | 480 | 8 | 459 | 4 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | het | 44.6395 | 28.9183 | 97.8170 | 82.5282 | 941 | 2313 | 941 | 21 | 1 | 4.7619 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 98.6492 | 98.8057 | 98.4933 | 82.5249 | 1241 | 15 | 1242 | 19 | 5 | 26.3158 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | het | 82.5467 | 77.0492 | 88.8889 | 82.5243 | 47 | 14 | 48 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.3779 | 98.3051 | 96.4680 | 82.5231 | 522 | 9 | 874 | 32 | 29 | 90.6250 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | * | 55.8559 | 43.3566 | 78.4810 | 82.5221 | 62 | 81 | 62 | 17 | 14 | 82.3529 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m1_e0 | het | 96.5664 | 94.3144 | 98.9286 | 82.5218 | 282 | 17 | 277 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.9023 | 98.7458 | 99.0593 | 82.5203 | 4094 | 52 | 4107 | 39 | 10 | 25.6410 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | het | 96.2185 | 98.9058 | 93.6733 | 82.5202 | 6870 | 76 | 6870 | 464 | 74 | 15.9483 | |