PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36051-36100 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.5611 | 96.0968 | 95.0314 | 82.9837 | 1748 | 71 | 1511 | 79 | 62 | 78.4810 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2481 | 99.2481 | 99.2481 | 82.9814 | 264 | 2 | 264 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3548 | 99.8148 | 98.8991 | 82.9794 | 539 | 1 | 539 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | het | 70.5882 | 66.6667 | 75.0000 | 82.9787 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 82.9787 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.9787 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.9787 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 74.1573 | 73.3333 | 75.0000 | 82.9787 | 11 | 4 | 24 | 8 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.6190 | 95.4920 | 93.7617 | 82.9704 | 1737 | 82 | 1503 | 100 | 82 | 82.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.6190 | 95.4920 | 93.7617 | 82.9704 | 1737 | 82 | 1503 | 100 | 82 | 82.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7660 | 99.5995 | 99.9330 | 82.9644 | 1492 | 6 | 1492 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0228 | 98.0645 | 100.0000 | 82.9596 | 152 | 3 | 152 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_siren | * | 95.6890 | 96.4725 | 94.9180 | 82.9590 | 2899 | 106 | 2895 | 155 | 39 | 25.1613 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 3.7736 | 82.9582 | 0 | 0 | 2 | 51 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | homalt | 98.9674 | 98.8105 | 99.1249 | 82.9559 | 1246 | 15 | 1246 | 11 | 5 | 45.4545 | |
| astatham-gatk | SNP | ti | map_l150_m1_e0 | het | 85.9873 | 75.6508 | 99.5954 | 82.9552 | 9358 | 3012 | 9354 | 38 | 18 | 47.3684 | |
| ghariani-varprowl | SNP | * | map_l150_m2_e0 | het | 96.9127 | 98.7732 | 95.1210 | 82.9549 | 19886 | 247 | 19886 | 1020 | 198 | 19.4118 | |
| ciseli-custom | SNP | tv | map_l150_m2_e1 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.9545 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m2_e1 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.9545 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ckim-vqsr | SNP | ti | map_l100_m1_e0 | het | 85.6453 | 75.3523 | 99.1953 | 82.9534 | 22562 | 7380 | 22557 | 183 | 10 | 5.4645 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 41.7093 | 29.6774 | 70.1493 | 82.9517 | 46 | 109 | 47 | 20 | 19 | 95.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | het | 92.9455 | 91.2079 | 94.7505 | 82.9512 | 2137 | 206 | 2184 | 121 | 22 | 18.1818 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 44.7761 | 100.0000 | 28.8462 | 82.9508 | 15 | 0 | 15 | 37 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 44.7761 | 100.0000 | 28.8462 | 82.9508 | 15 | 0 | 15 | 37 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.7435 | 93.5247 | 98.0701 | 82.9494 | 1401 | 97 | 1372 | 27 | 13 | 48.1481 | |
| qzeng-custom | SNP | ti | map_l125_m2_e0 | * | 83.2073 | 72.4998 | 97.6254 | 82.9474 | 21937 | 8321 | 21790 | 530 | 441 | 83.2075 | |
| hfeng-pmm2 | INDEL | * | map_l100_m2_e0 | homalt | 99.1690 | 99.3656 | 98.9731 | 82.9472 | 1253 | 8 | 1253 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.7016 | 98.6472 | 98.7561 | 82.9460 | 1823 | 25 | 1826 | 23 | 9 | 39.1304 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 71.9347 | 56.7912 | 98.0910 | 82.9452 | 669 | 509 | 668 | 13 | 8 | 61.5385 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | * | 97.4288 | 95.8621 | 99.0476 | 82.9442 | 834 | 36 | 832 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | het | 45.4208 | 35.5932 | 62.7451 | 82.9431 | 21 | 38 | 32 | 19 | 5 | 26.3158 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | * | 37.7799 | 25.3595 | 74.0458 | 82.9427 | 194 | 571 | 194 | 68 | 60 | 88.2353 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.9412 | 27 | 4 | 29 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | het | 94.7477 | 94.6794 | 94.8162 | 82.9388 | 15090 | 848 | 15090 | 825 | 397 | 48.1212 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0429 | 88.9798 | 97.4948 | 82.9386 | 4239 | 525 | 4242 | 109 | 14 | 12.8440 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | het | 72.8311 | 60.4167 | 91.6667 | 82.9384 | 29 | 19 | 33 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 52.5373 | 61.5385 | 45.8333 | 82.9384 | 16 | 10 | 33 | 39 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l125_m2_e1 | * | 83.3343 | 72.6815 | 97.6462 | 82.9373 | 22218 | 8351 | 22070 | 532 | 443 | 83.2707 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | * | 94.1176 | 91.2281 | 97.1963 | 82.9346 | 104 | 10 | 104 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 77.6657 | 65.6975 | 94.9658 | 82.9333 | 9038 | 4719 | 9036 | 479 | 120 | 25.0522 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 77.6657 | 65.6975 | 94.9658 | 82.9333 | 9038 | 4719 | 9036 | 479 | 120 | 25.0522 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | * | 98.1974 | 97.7984 | 98.5998 | 82.9317 | 844 | 19 | 845 | 12 | 3 | 25.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | het | 76.3802 | 83.3333 | 70.4981 | 82.9300 | 105 | 21 | 184 | 77 | 53 | 68.8312 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3959 | 99.1682 | 99.6246 | 82.9296 | 2623 | 22 | 2654 | 10 | 6 | 60.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m1_e0 | * | 98.0764 | 97.9437 | 98.2094 | 82.9273 | 1810 | 38 | 1810 | 33 | 12 | 36.3636 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | * | 92.0149 | 97.7077 | 86.9489 | 82.9272 | 6479 | 152 | 6469 | 971 | 34 | 3.5015 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | het | 66.6667 | 62.5000 | 71.4286 | 82.9268 | 5 | 3 | 5 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6764 | 99.3548 | 100.0000 | 82.9268 | 154 | 1 | 154 | 0 | 0 | ||