PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35551-35600 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.4951 | 16 | 0 | 17 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | het | 92.3597 | 87.7863 | 97.4359 | 83.4921 | 115 | 16 | 152 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.0946 | 96.9669 | 99.2488 | 83.4909 | 1055 | 33 | 1057 | 8 | 1 | 12.5000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.7326 | 98.1084 | 99.3647 | 83.4872 | 778 | 15 | 782 | 5 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 83.4862 | 18 | 1 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.2308 | 100.0000 | 80.5556 | 83.4862 | 22 | 0 | 29 | 7 | 6 | 85.7143 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.2641 | 99.3453 | 99.1830 | 83.4862 | 607 | 4 | 607 | 5 | 4 | 80.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | * | 97.0527 | 94.8886 | 99.3179 | 83.4836 | 724 | 39 | 728 | 5 | 2 | 40.0000 | |
| anovak-vg | INDEL | C1_5 | HG002complexvar | * | 63.2248 | 71.4286 | 56.7114 | 83.4812 | 5 | 2 | 169 | 129 | 19 | 14.7287 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.7830 | 98.8722 | 92.8811 | 83.4809 | 1315 | 15 | 1109 | 85 | 72 | 84.7059 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.0232 | 98.0670 | 78.2151 | 83.4802 | 28157 | 555 | 28299 | 7882 | 82 | 1.0404 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.0232 | 98.0670 | 78.2151 | 83.4802 | 28157 | 555 | 28299 | 7882 | 82 | 1.0404 | |
| asubramanian-gatk | SNP | ti | map_l100_m1_e0 | * | 61.7256 | 44.6642 | 99.8787 | 83.4799 | 21408 | 26523 | 21404 | 26 | 10 | 38.4615 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 97.1429 | 94.4444 | 100.0000 | 83.4783 | 17 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.6068 | 99.2167 | 100.0000 | 83.4783 | 380 | 3 | 380 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 97.1429 | 94.4444 | 100.0000 | 83.4783 | 17 | 1 | 19 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 97.1429 | 94.4444 | 100.0000 | 83.4783 | 17 | 1 | 19 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_siren | * | 92.4494 | 93.3444 | 91.5714 | 83.4764 | 2805 | 200 | 2803 | 258 | 121 | 46.8992 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | * | 98.5982 | 98.2428 | 98.9561 | 83.4763 | 3690 | 66 | 3697 | 39 | 9 | 23.0769 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e1 | homalt | 96.7506 | 95.0980 | 98.4615 | 83.4746 | 194 | 10 | 192 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.6740 | 97.9592 | 99.3994 | 83.4739 | 336 | 7 | 331 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 74.4043 | 72.9730 | 75.8929 | 83.4686 | 162 | 60 | 170 | 54 | 48 | 88.8889 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 62.8931 | 46.2963 | 98.0392 | 83.4684 | 100 | 116 | 100 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_l100_m1_e0 | * | 80.7967 | 68.0462 | 99.4275 | 83.4681 | 16672 | 7829 | 16673 | 96 | 19 | 19.7917 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | * | 71.1252 | 62.2642 | 82.9268 | 83.4677 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.2366 | 99.3884 | 99.0854 | 83.4677 | 325 | 2 | 325 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | het | 93.2098 | 98.3701 | 88.5639 | 83.4663 | 10381 | 172 | 10354 | 1337 | 65 | 4.8616 | |
| dgrover-gatk | INDEL | * | map_siren | * | 98.9418 | 98.9474 | 98.9362 | 83.4662 | 7332 | 78 | 7347 | 79 | 18 | 22.7848 | |
| jlack-gatk | INDEL | D1_5 | map_siren | * | 96.8891 | 99.0932 | 94.7810 | 83.4660 | 3497 | 32 | 3505 | 193 | 13 | 6.7358 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | * | 65.8098 | 50.0000 | 96.2406 | 83.4577 | 129 | 129 | 128 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | het | 92.4188 | 89.5105 | 95.5224 | 83.4568 | 128 | 15 | 128 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.7382 | 99.4778 | 100.0000 | 83.4564 | 381 | 2 | 381 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l100_m2_e1 | homalt | 98.9071 | 98.9071 | 98.9071 | 83.4560 | 1267 | 14 | 1267 | 14 | 9 | 64.2857 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.5285 | 88.0000 | 91.1111 | 83.4559 | 44 | 6 | 41 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | het | 76.5318 | 83.2061 | 70.8487 | 83.4554 | 109 | 22 | 192 | 79 | 55 | 69.6203 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.1176 | 98.8270 | 99.4100 | 83.4553 | 337 | 4 | 337 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.7398 | 98.2079 | 99.2775 | 83.4529 | 1370 | 25 | 1374 | 10 | 4 | 40.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3902 | 99.6942 | 99.0881 | 83.4507 | 326 | 1 | 326 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | het | 97.7103 | 97.2707 | 98.1540 | 83.4501 | 2174 | 61 | 2180 | 41 | 18 | 43.9024 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 90.3792 | 84.8945 | 96.6216 | 83.4493 | 1287 | 229 | 1287 | 45 | 5 | 11.1111 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 99.1307 | 98.5185 | 99.7506 | 83.4469 | 798 | 12 | 800 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.2817 | 99.2817 | 99.2817 | 83.4450 | 2626 | 19 | 2626 | 19 | 6 | 31.5789 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 89.8828 | 86.1111 | 94.0000 | 83.4437 | 93 | 15 | 94 | 6 | 2 | 33.3333 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8377 | 98.6970 | 98.9788 | 83.4427 | 9014 | 119 | 9014 | 93 | 10 | 10.7527 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8377 | 98.6970 | 98.9788 | 83.4427 | 9014 | 119 | 9014 | 93 | 10 | 10.7527 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3600 | 99.0514 | 99.6705 | 83.4424 | 1253 | 12 | 1210 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.0436 | 94.8586 | 99.3316 | 83.4403 | 738 | 40 | 743 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | het | 97.6490 | 97.1391 | 98.1643 | 83.4371 | 2241 | 66 | 2246 | 42 | 8 | 19.0476 | |
| ltrigg-rtg1 | SNP | * | map_l250_m0_e0 | het | 94.1134 | 89.1766 | 99.6288 | 83.4358 | 1343 | 163 | 1342 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | homalt | 95.9415 | 93.1525 | 98.9026 | 83.4356 | 721 | 53 | 721 | 8 | 5 | 62.5000 | |