PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34701-34750 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | het | 97.5246 | 97.9627 | 97.0903 | 84.4521 | 2260 | 47 | 2269 | 68 | 29 | 42.6471 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 65.0184 | 70.8333 | 60.0858 | 84.4511 | 272 | 112 | 280 | 186 | 100 | 53.7634 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | het | 97.4137 | 97.1831 | 97.6454 | 84.4497 | 483 | 14 | 705 | 17 | 10 | 58.8235 | |
| jlack-gatk | INDEL | * | map_siren | * | 96.8350 | 98.5155 | 95.2108 | 84.4494 | 7300 | 110 | 7316 | 368 | 36 | 9.7826 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | * | 95.0226 | 92.1053 | 98.1308 | 84.4477 | 105 | 9 | 105 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | het | 94.1854 | 93.9645 | 94.4074 | 84.4472 | 17935 | 1152 | 17961 | 1064 | 575 | 54.0414 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 74.0111 | 93.5484 | 61.2245 | 84.4444 | 58 | 4 | 60 | 38 | 37 | 97.3684 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 84.4444 | 7 | 1 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.8728 | 90.9091 | 92.8571 | 84.4444 | 10 | 1 | 13 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 85.7143 | 84.4444 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 85.7143 | 84.4444 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 84.4444 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5163 | 97.1354 | 97.9003 | 84.4426 | 373 | 11 | 373 | 8 | 2 | 25.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | het | 95.0101 | 93.0070 | 97.1014 | 84.4419 | 133 | 10 | 134 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | het | 42.3276 | 27.0229 | 97.6103 | 84.4394 | 531 | 1434 | 531 | 13 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3643 | 99.3432 | 95.4628 | 84.4394 | 605 | 4 | 526 | 25 | 10 | 40.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 73.3373 | 87.8049 | 62.9630 | 84.4380 | 36 | 5 | 34 | 20 | 7 | 35.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | * | 85.4353 | 75.2688 | 98.7770 | 84.4363 | 1050 | 345 | 1050 | 13 | 5 | 38.4615 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0291 | 98.8372 | 99.2218 | 84.4337 | 255 | 3 | 255 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e0 | hetalt | 96.0000 | 100.0000 | 92.3077 | 84.4311 | 24 | 0 | 24 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6175 | 98.5267 | 98.7085 | 84.4298 | 535 | 8 | 535 | 7 | 2 | 28.5714 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | het | 94.1776 | 98.5714 | 90.1587 | 84.4291 | 276 | 4 | 284 | 31 | 19 | 61.2903 | |
| jli-custom | INDEL | * | HG002compoundhet | homalt | 72.9600 | 99.7085 | 57.5273 | 84.4270 | 684 | 2 | 684 | 505 | 502 | 99.4059 | |
| jmaeng-gatk | INDEL | I6_15 | HG002compoundhet | het | 84.9309 | 97.1154 | 75.4630 | 84.4268 | 202 | 6 | 163 | 53 | 53 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.4262 | 19 | 0 | 19 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 97.1429 | 94.4444 | 100.0000 | 84.4262 | 17 | 1 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l250_m0_e0 | het | 94.3034 | 89.5075 | 99.6424 | 84.4255 | 836 | 98 | 836 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e0 | het | 94.1306 | 93.9023 | 94.3600 | 84.4255 | 17725 | 1151 | 17751 | 1061 | 573 | 54.0057 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2090 | 98.8739 | 99.5465 | 84.4225 | 439 | 5 | 439 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 84.4214 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e1 | * | 97.4531 | 96.7509 | 98.1656 | 84.4194 | 1876 | 63 | 1873 | 35 | 8 | 22.8571 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.1209 | 100.0000 | 65.4545 | 84.4193 | 169 | 0 | 72 | 38 | 37 | 97.3684 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.4156 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.4156 | 12 | 0 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 89.5522 | 81.0811 | 100.0000 | 84.4156 | 60 | 14 | 60 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.0000 | 81.8182 | 100.0000 | 84.4156 | 9 | 2 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.4156 | 12 | 3 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | * | 98.2754 | 98.3365 | 98.2143 | 84.4120 | 1537 | 26 | 1540 | 28 | 6 | 21.4286 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.1354 | 97.1354 | 97.1354 | 84.4093 | 373 | 11 | 373 | 11 | 2 | 18.1818 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | * | 94.2222 | 91.3793 | 97.2477 | 84.4063 | 106 | 10 | 106 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 46.8531 | 84.4057 | 0 | 0 | 134 | 152 | 44 | 28.9474 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e0 | * | 93.7318 | 92.5326 | 94.9625 | 84.4045 | 1772 | 143 | 1772 | 94 | 63 | 67.0213 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6660 | 81.6092 | 97.0588 | 84.4037 | 71 | 16 | 66 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | hetalt | 48.8074 | 34.6851 | 82.3281 | 84.4012 | 1283 | 2416 | 1365 | 293 | 225 | 76.7918 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.6970 | 85.0575 | 94.8718 | 84.4000 | 74 | 13 | 74 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.2612 | 99.0548 | 99.4685 | 84.3994 | 2620 | 25 | 2620 | 14 | 6 | 42.8571 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2348 | 98.9437 | 99.5277 | 84.3986 | 843 | 9 | 843 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9616 | 98.9247 | 98.9986 | 84.3973 | 1380 | 15 | 1384 | 14 | 4 | 28.5714 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | het | 98.2368 | 99.2937 | 97.2021 | 84.3948 | 5061 | 36 | 4968 | 143 | 4 | 2.7972 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | homalt | 99.3179 | 99.4536 | 99.1826 | 84.3929 | 728 | 4 | 728 | 6 | 4 | 66.6667 | |