PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34651-34700 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7696 | 99.0826 | 98.4586 | 84.5167 | 324 | 3 | 511 | 8 | 7 | 87.5000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 84.5161 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 84.5161 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.8127 | 85.8491 | 96.3855 | 84.5149 | 91 | 15 | 80 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m1_e0 | * | 93.1507 | 89.4737 | 97.1429 | 84.5133 | 102 | 12 | 102 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D6_15 | map_siren | * | 62.3762 | 61.8861 | 62.8743 | 84.5131 | 315 | 194 | 315 | 186 | 97 | 52.1505 | |
| ckim-gatk | SNP | ti | map_l125_m2_e0 | * | 85.0542 | 75.0248 | 98.1789 | 84.5122 | 22701 | 7557 | 22697 | 421 | 45 | 10.6888 | |
| dgrover-gatk | INDEL | I6_15 | HG002compoundhet | het | 86.2668 | 98.0769 | 76.9953 | 84.5091 | 204 | 4 | 164 | 49 | 48 | 97.9592 | |
| ckim-gatk | SNP | ti | map_l125_m2_e1 | * | 85.1950 | 75.2331 | 98.1978 | 84.5085 | 22998 | 7571 | 22994 | 422 | 45 | 10.6635 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | homalt | 85.0834 | 74.2295 | 99.6552 | 84.5085 | 867 | 301 | 867 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e0 | het | 98.5410 | 97.9823 | 99.1060 | 84.5073 | 777 | 16 | 776 | 7 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | homalt | 76.9231 | 66.6667 | 90.9091 | 84.5070 | 10 | 5 | 10 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_siren | * | 31.6781 | 21.6393 | 59.0909 | 84.5070 | 66 | 239 | 65 | 45 | 41 | 91.1111 | |
| ciseli-custom | INDEL | D1_5 | map_siren | * | 83.6317 | 82.1196 | 85.2005 | 84.5008 | 2898 | 631 | 2890 | 502 | 233 | 46.4143 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8871 | 98.1073 | 99.6795 | 84.5007 | 933 | 18 | 933 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 84.5000 | 62 | 2 | 62 | 0 | 0 | ||
| jlack-gatk | SNP | tv | map_l125_m2_e0 | het | 92.9966 | 99.0806 | 87.6165 | 84.4986 | 10346 | 96 | 10344 | 1462 | 81 | 5.5404 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e1 | * | 93.6537 | 92.4703 | 94.8677 | 84.4955 | 1793 | 146 | 1793 | 97 | 64 | 65.9794 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | * | 94.8478 | 90.5386 | 99.5876 | 84.4949 | 1933 | 202 | 1932 | 8 | 3 | 37.5000 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | * | 81.3480 | 68.8368 | 99.4174 | 84.4949 | 17404 | 7879 | 17405 | 102 | 20 | 19.6078 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 82.8241 | 83.7838 | 81.8862 | 84.4940 | 558 | 108 | 547 | 121 | 110 | 90.9091 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 82.8241 | 83.7838 | 81.8862 | 84.4940 | 558 | 108 | 547 | 121 | 110 | 90.9091 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | het | 95.1985 | 95.5072 | 94.8918 | 84.4938 | 4868 | 229 | 4867 | 262 | 76 | 29.0076 | |
| gduggal-snapplat | SNP | ti | map_l150_m2_e0 | * | 93.1515 | 90.7274 | 95.7087 | 84.4902 | 18610 | 1902 | 18623 | 835 | 473 | 56.6467 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 37.4948 | 41.7896 | 34.0005 | 84.4865 | 2550 | 3552 | 2650 | 5144 | 58 | 1.1275 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.9986 | 99.1404 | 98.8571 | 84.4858 | 346 | 3 | 346 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.1873 | 97.1129 | 99.2857 | 84.4854 | 1110 | 33 | 1112 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 84.4843 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 84.4828 | 18 | 1 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 77.3061 | 64.3777 | 96.7320 | 84.4828 | 150 | 83 | 148 | 5 | 4 | 80.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 91.8919 | 89.4737 | 94.4444 | 84.4828 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 71.6418 | 60.0000 | 88.8889 | 84.4828 | 9 | 6 | 8 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | * | 84.6007 | 85.6397 | 83.5866 | 84.4811 | 1640 | 275 | 1650 | 324 | 122 | 37.6543 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | * | 81.2500 | 73.5849 | 90.6977 | 84.4765 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | het | 89.2193 | 83.3333 | 96.0000 | 84.4720 | 25 | 5 | 24 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m1_e0 | * | 97.2332 | 95.3488 | 99.1935 | 84.4709 | 246 | 12 | 246 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.8527 | 89.3939 | 86.3636 | 84.4706 | 59 | 7 | 57 | 9 | 4 | 44.4444 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | het | 95.7880 | 94.1234 | 97.5124 | 84.4692 | 961 | 60 | 980 | 25 | 1 | 4.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 87.4751 | 80.0000 | 96.4912 | 84.4687 | 28 | 7 | 55 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | * | 93.8073 | 91.3743 | 96.3735 | 84.4642 | 1250 | 118 | 1249 | 47 | 34 | 72.3404 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 84.4625 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 64.8045 | 74.3750 | 57.4163 | 84.4610 | 119 | 41 | 120 | 89 | 86 | 96.6292 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9254 | 98.8530 | 98.9979 | 84.4605 | 1379 | 16 | 1383 | 14 | 4 | 28.5714 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | hetalt | 94.9153 | 96.5517 | 93.3333 | 84.4560 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 84.4560 | 31 | 2 | 30 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 91.1765 | 83.7838 | 100.0000 | 84.4560 | 31 | 6 | 30 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | het | 95.6215 | 97.1235 | 94.1653 | 84.4545 | 574 | 17 | 581 | 36 | 4 | 11.1111 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | * | 96.2111 | 96.1880 | 96.2343 | 84.4528 | 1842 | 73 | 1840 | 72 | 13 | 18.0556 | |