PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34201-34250 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | tv | map_l125_m0_e0 | het | 70.2747 | 63.3947 | 78.8298 | 84.9536 | 2790 | 1611 | 2789 | 749 | 26 | 3.4713 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e1 | homalt | 92.4410 | 86.9919 | 98.6183 | 84.9532 | 428 | 64 | 571 | 8 | 6 | 75.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e0 | hetalt | 95.0820 | 96.6667 | 93.5484 | 84.9515 | 29 | 1 | 29 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e0 | homalt | 98.7417 | 97.9210 | 99.5763 | 84.9490 | 471 | 10 | 470 | 2 | 1 | 50.0000 | |
| mlin-fermikit | SNP | ti | segdup | het | 97.7090 | 96.7914 | 98.6442 | 84.9489 | 11644 | 386 | 11641 | 160 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.5393 | 89.0244 | 98.5366 | 84.9486 | 219 | 27 | 202 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | het | 63.1452 | 47.4614 | 94.3107 | 84.9473 | 430 | 476 | 431 | 26 | 12 | 46.1538 | |
| raldana-dualsentieon | INDEL | * | map_l125_m1_e0 | * | 97.7814 | 97.1998 | 98.3701 | 84.9452 | 2048 | 59 | 2052 | 34 | 6 | 17.6471 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 98.9652 | 98.3539 | 99.5842 | 84.9452 | 478 | 8 | 479 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.1871 | 54.4379 | 84.4037 | 84.9448 | 92 | 77 | 92 | 17 | 17 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1887 | 96.0131 | 98.3936 | 84.9441 | 1469 | 61 | 1470 | 24 | 17 | 70.8333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1887 | 96.0131 | 98.3936 | 84.9441 | 1469 | 61 | 1470 | 24 | 17 | 70.8333 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 92.8571 | 88.1356 | 98.1132 | 84.9432 | 52 | 7 | 52 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.6794 | 95.3401 | 98.0570 | 84.9425 | 757 | 37 | 757 | 15 | 9 | 60.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2679 | 99.4135 | 99.1228 | 84.9406 | 339 | 2 | 339 | 3 | 1 | 33.3333 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 84.9398 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 93.8776 | 95.8333 | 92.0000 | 84.9398 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 96.9509 | 96.2121 | 97.7011 | 84.9394 | 254 | 10 | 255 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | homalt | 74.5239 | 83.0769 | 67.5676 | 84.9389 | 54 | 11 | 75 | 36 | 33 | 91.6667 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 82.9268 | 82.2581 | 83.6066 | 84.9383 | 51 | 11 | 51 | 10 | 2 | 20.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 82.1159 | 98.1982 | 70.5600 | 84.9325 | 436 | 8 | 441 | 184 | 107 | 58.1522 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 16.6667 | 100.0000 | 9.0909 | 84.9315 | 1 | 0 | 1 | 10 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | homalt | 74.3512 | 83.5821 | 66.9565 | 84.9279 | 56 | 11 | 77 | 38 | 35 | 92.1053 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0794 | 48.2353 | 100.0000 | 84.9265 | 41 | 44 | 41 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 79.1231 | 74.0733 | 84.9119 | 84.9242 | 3597 | 1259 | 3613 | 642 | 94 | 14.6417 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.5966 | 91.5686 | 97.8316 | 84.9216 | 1401 | 129 | 1534 | 34 | 25 | 73.5294 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 94.5966 | 91.5686 | 97.8316 | 84.9216 | 1401 | 129 | 1534 | 34 | 25 | 73.5294 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 57.1429 | 66.6667 | 50.0000 | 84.9206 | 18 | 9 | 19 | 19 | 18 | 94.7368 | |
| gduggal-snapvard | INDEL | I6_15 | segdup | homalt | 43.3333 | 27.6596 | 100.0000 | 84.9206 | 13 | 34 | 19 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.8901 | 95.6863 | 98.1246 | 84.9192 | 1464 | 66 | 1465 | 28 | 18 | 64.2857 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.8901 | 95.6863 | 98.1246 | 84.9192 | 1464 | 66 | 1465 | 28 | 18 | 64.2857 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4615 | 98.4615 | 98.4615 | 84.9188 | 64 | 1 | 64 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.9766 | 49.2569 | 87.2897 | 84.9168 | 464 | 478 | 467 | 68 | 2 | 2.9412 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.0248 | 95.3430 | 92.7426 | 84.9164 | 10298 | 503 | 10121 | 792 | 175 | 22.0960 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | het | 85.4369 | 89.7959 | 81.4815 | 84.9162 | 44 | 5 | 44 | 10 | 7 | 70.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.5740 | 96.7742 | 98.3871 | 84.9148 | 60 | 2 | 61 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 84.9138 | 35 | 0 | 35 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 48.6558 | 37.7049 | 68.5714 | 84.9138 | 23 | 38 | 24 | 11 | 10 | 90.9091 | |
| jlack-gatk | INDEL | I1_5 | map_siren | het | 96.7640 | 98.4533 | 95.1317 | 84.9119 | 1655 | 26 | 1661 | 85 | 5 | 5.8824 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | * | 57.8586 | 58.9964 | 56.7639 | 84.9109 | 823 | 572 | 856 | 652 | 469 | 71.9325 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 84.9099 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e1 | homalt | 98.7709 | 97.9675 | 99.5876 | 84.9098 | 482 | 10 | 483 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_siren | het | 81.0642 | 92.5000 | 72.1448 | 84.9096 | 259 | 21 | 259 | 100 | 93 | 93.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.9624 | 97.8970 | 88.5014 | 84.9075 | 931 | 20 | 939 | 122 | 1 | 0.8197 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 84.9057 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.9057 | 0 | 0 | 0 | 8 | 0 | 0.0000 | ||
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.9057 | 8 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 64.2857 | 47.3684 | 100.0000 | 84.9057 | 9 | 10 | 16 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 84.9057 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 73.6842 | 63.6364 | 87.5000 | 84.9057 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |