PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34051-34100 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 18.7853 | 15.3926 | 24.0964 | 85.0898 | 149 | 819 | 240 | 756 | 119 | 15.7407 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | hetalt | 93.7500 | 100.0000 | 88.2353 | 85.0877 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5608 | 99.7067 | 99.4152 | 85.0850 | 340 | 1 | 340 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I1_5 | map_l150_m1_e0 | homalt | 69.0375 | 93.9394 | 54.5714 | 85.0810 | 186 | 12 | 191 | 159 | 143 | 89.9371 | |
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 85.0806 | 0 | 0 | 0 | 37 | 0 | 0.0000 | ||
| cchapple-custom | SNP | * | map_l250_m2_e1 | homalt | 98.1075 | 96.3208 | 99.9618 | 85.0801 | 2618 | 100 | 2617 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | het | 96.4347 | 94.4444 | 98.5106 | 85.0794 | 459 | 27 | 463 | 7 | 1 | 14.2857 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 47.1671 | 52.9412 | 42.5287 | 85.0772 | 9 | 8 | 37 | 50 | 1 | 2.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 77.6887 | 86.0465 | 70.8108 | 85.0746 | 222 | 36 | 262 | 108 | 10 | 9.2593 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 46.5116 | 43.4783 | 50.0000 | 85.0746 | 10 | 13 | 10 | 10 | 9 | 90.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0746 | 18 | 0 | 20 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.0746 | 20 | 2 | 20 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 5.3812 | 85.0736 | 0 | 0 | 12 | 211 | 81 | 38.3886 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | het | 88.6343 | 97.2835 | 81.3975 | 85.0700 | 7055 | 197 | 7036 | 1608 | 95 | 5.9080 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | het | 64.3246 | 54.3478 | 78.7879 | 85.0679 | 25 | 21 | 26 | 7 | 4 | 57.1429 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 35.0458 | 95.2883 | 21.4714 | 85.0675 | 1355 | 67 | 1398 | 5113 | 85 | 1.6624 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | * | 92.7527 | 90.2330 | 95.4173 | 85.0649 | 28741 | 3111 | 28754 | 1381 | 761 | 55.1050 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.8623 | 89.4444 | 96.5517 | 85.0649 | 644 | 76 | 644 | 23 | 10 | 43.4783 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 91.6509 | 92.0000 | 91.3043 | 85.0649 | 46 | 4 | 42 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.3125 | 98.8799 | 99.7489 | 85.0633 | 1589 | 18 | 1589 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.5989 | 91.3889 | 95.9184 | 85.0610 | 658 | 62 | 658 | 28 | 8 | 28.5714 | |
| cchapple-custom | INDEL | * | map_l125_m2_e1 | homalt | 98.2393 | 97.2868 | 99.2105 | 85.0600 | 753 | 21 | 754 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | het | 91.2008 | 97.7811 | 85.4502 | 85.0594 | 12383 | 281 | 12251 | 2086 | 87 | 4.1707 | |
| mlin-fermikit | SNP | ti | segdup | * | 98.0976 | 97.5329 | 98.6689 | 85.0585 | 19055 | 482 | 19051 | 257 | 86 | 33.4630 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 85.0575 | 65 | 2 | 65 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.0575 | 10 | 1 | 13 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | * | 94.2615 | 92.2652 | 96.3462 | 85.0575 | 501 | 42 | 501 | 19 | 12 | 63.1579 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.6404 | 92.1400 | 97.2803 | 85.0563 | 1395 | 119 | 1395 | 39 | 17 | 43.5897 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | het | 63.3120 | 47.6190 | 94.4325 | 85.0560 | 440 | 484 | 441 | 26 | 12 | 46.1538 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 7.3529 | 85.0549 | 0 | 0 | 10 | 126 | 4 | 3.1746 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6285 | 99.0792 | 98.1818 | 85.0543 | 538 | 5 | 540 | 10 | 3 | 30.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 61.1743 | 60.6771 | 61.6798 | 85.0530 | 233 | 151 | 235 | 146 | 135 | 92.4658 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.1892 | 98.6559 | 99.7283 | 85.0528 | 367 | 5 | 367 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.2204 | 94.5844 | 97.9140 | 85.0487 | 751 | 43 | 751 | 16 | 7 | 43.7500 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 85.0480 | 340 | 1 | 340 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 59.5098 | 45.1054 | 87.4307 | 85.0479 | 4193 | 5103 | 4257 | 612 | 532 | 86.9281 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3590 | 100.0000 | 98.7261 | 85.0476 | 155 | 0 | 155 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3562 | 98.7207 | 100.0000 | 85.0452 | 463 | 6 | 463 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.1713 | 98.6264 | 99.7222 | 85.0436 | 359 | 5 | 359 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4509 | 97.9424 | 98.9648 | 85.0418 | 476 | 10 | 478 | 5 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e1 | het | 90.0889 | 96.5271 | 84.4559 | 85.0397 | 12563 | 452 | 12464 | 2294 | 173 | 7.5414 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 27.8246 | 18.0645 | 60.5263 | 85.0394 | 28 | 127 | 23 | 15 | 3 | 20.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 48.7179 | 32.2034 | 100.0000 | 85.0394 | 19 | 40 | 19 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | het | 86.3591 | 77.1293 | 98.0981 | 85.0382 | 978 | 290 | 980 | 19 | 7 | 36.8421 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 54.1881 | 37.8431 | 95.3871 | 85.0345 | 579 | 951 | 579 | 28 | 21 | 75.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 54.1881 | 37.8431 | 95.3871 | 85.0345 | 579 | 951 | 579 | 28 | 21 | 75.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.0564 | 88.9542 | 44.2005 | 85.0316 | 757 | 94 | 785 | 991 | 11 | 1.1100 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | het | 93.8837 | 93.6910 | 94.0772 | 85.0315 | 27770 | 1870 | 27797 | 1750 | 928 | 53.0286 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.9377 | 80.6789 | 94.2492 | 85.0311 | 309 | 74 | 295 | 18 | 10 | 55.5556 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3282 | 96.4052 | 98.2690 | 85.0309 | 1475 | 55 | 1476 | 26 | 18 | 69.2308 | |