PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33651-33700 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m1_e0 | * | 95.0673 | 92.9825 | 97.2477 | 85.4473 | 106 | 8 | 106 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I1_5 | HG002compoundhet | het | 90.5365 | 97.8824 | 84.2162 | 85.4468 | 832 | 18 | 779 | 146 | 134 | 91.7808 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | homalt | 96.1591 | 94.0299 | 98.3871 | 85.4460 | 63 | 4 | 61 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | homalt | 99.6819 | 99.3658 | 100.0000 | 85.4444 | 940 | 6 | 940 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | het | 97.0417 | 96.2782 | 97.8175 | 85.4440 | 983 | 38 | 986 | 22 | 6 | 27.2727 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | * | 97.3023 | 96.9892 | 97.6173 | 85.4425 | 1353 | 42 | 1352 | 33 | 8 | 24.2424 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e0 | het | 98.6122 | 98.3607 | 98.8651 | 85.4415 | 780 | 13 | 784 | 9 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0398 | 99.1758 | 98.9041 | 85.4408 | 361 | 3 | 361 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_l125_m0_e0 | homalt | 66.4001 | 91.2281 | 52.1951 | 85.4403 | 104 | 10 | 107 | 98 | 91 | 92.8571 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | het | 93.6780 | 98.7414 | 89.1086 | 85.4382 | 8159 | 104 | 8157 | 997 | 87 | 8.7262 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | homalt | 99.3044 | 99.0395 | 99.5708 | 85.4375 | 928 | 9 | 928 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 85.4369 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.5207 | 95.1613 | 100.0000 | 85.4369 | 59 | 3 | 60 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 57.6923 | 40.5405 | 100.0000 | 85.4369 | 15 | 22 | 15 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_siren | het | 97.6349 | 99.5169 | 95.8228 | 85.4351 | 2266 | 11 | 2271 | 99 | 5 | 5.0505 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 82.2869 | 90.1639 | 75.6757 | 85.4331 | 55 | 6 | 56 | 18 | 11 | 61.1111 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | homalt | 98.0054 | 96.0888 | 100.0000 | 85.4327 | 909 | 37 | 909 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 98.8405 | 98.8138 | 98.8671 | 85.4314 | 1916 | 23 | 1920 | 22 | 5 | 22.7273 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4706 | 100.0000 | 93.1818 | 85.4305 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4706 | 100.0000 | 93.1818 | 85.4305 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | SNP | ti | map_l150_m0_e0 | * | 89.0696 | 94.6444 | 84.1150 | 85.4263 | 7440 | 421 | 7371 | 1392 | 107 | 7.6868 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.6376 | 97.1213 | 76.5824 | 85.4250 | 4116 | 122 | 4150 | 1269 | 11 | 0.8668 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8315 | 98.5998 | 99.0643 | 85.4245 | 845 | 12 | 847 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 96.5074 | 94.0502 | 99.0964 | 85.4242 | 1312 | 83 | 1316 | 12 | 4 | 33.3333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.0751 | 96.5596 | 97.5962 | 85.4240 | 421 | 15 | 406 | 10 | 6 | 60.0000 | |
| hfeng-pmm2 | INDEL | * | map_l125_m2_e0 | homalt | 99.2157 | 99.4758 | 98.9570 | 85.4238 | 759 | 4 | 759 | 8 | 4 | 50.0000 | |
| ckim-isaac | SNP | tv | map_l250_m1_e0 | homalt | 52.7945 | 35.8645 | 100.0000 | 85.4226 | 307 | 549 | 307 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | homalt | 95.8935 | 92.6114 | 99.4168 | 85.4187 | 2557 | 204 | 2557 | 15 | 7 | 46.6667 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.2743 | 85.1852 | 64.2857 | 85.4167 | 23 | 4 | 9 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 85.4167 | 0 | 0 | 14 | 56 | 3 | 5.3571 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.7498 | 74.6269 | 92.8571 | 85.4167 | 50 | 17 | 52 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 85.4167 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 85.4167 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 66.6667 | 54.5455 | 85.7143 | 85.4167 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.0443 | 87.5315 | 94.8509 | 85.4150 | 695 | 99 | 700 | 38 | 2 | 5.2632 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | homalt | 97.3783 | 98.5270 | 96.2560 | 85.4148 | 602 | 9 | 797 | 31 | 25 | 80.6452 | |
| jlack-gatk | INDEL | I6_15 | map_siren | * | 94.4262 | 94.4262 | 94.4262 | 85.4137 | 288 | 17 | 288 | 17 | 4 | 23.5294 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.1614 | 75.3846 | 92.7273 | 85.4111 | 49 | 16 | 51 | 4 | 4 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 85.0862 | 98.1976 | 75.0636 | 85.4109 | 1471 | 27 | 1475 | 490 | 97 | 19.7959 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6571 | 96.7320 | 98.6000 | 85.4100 | 1480 | 50 | 1479 | 21 | 15 | 71.4286 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6571 | 96.7320 | 98.6000 | 85.4100 | 1480 | 50 | 1479 | 21 | 15 | 71.4286 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | het | 83.9386 | 73.4228 | 97.9701 | 85.4069 | 1641 | 594 | 1641 | 34 | 14 | 41.1765 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 64.6064 | 50.2642 | 90.4008 | 85.4064 | 856 | 847 | 857 | 91 | 11 | 12.0879 | |
| bgallagher-sentieon | INDEL | * | map_l100_m1_e0 | hetalt | 94.9615 | 91.1290 | 99.1304 | 85.4061 | 113 | 11 | 114 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 81.7107 | 93.5185 | 72.5504 | 85.4033 | 1212 | 84 | 1007 | 381 | 58 | 15.2231 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.4869 | 97.9518 | 99.0279 | 85.4026 | 813 | 17 | 815 | 8 | 3 | 37.5000 | |
| jlack-gatk | INDEL | * | map_l125_m1_e0 | homalt | 98.9071 | 98.9071 | 98.9071 | 85.4009 | 724 | 8 | 724 | 8 | 4 | 50.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4337 | 98.8739 | 100.0000 | 85.4007 | 439 | 5 | 439 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | homalt | 99.4901 | 99.0971 | 99.8862 | 85.3999 | 1756 | 16 | 1756 | 2 | 1 | 50.0000 | |