PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32901-32950 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m1_e0 | * | 97.3684 | 94.8718 | 100.0000 | 86.2069 | 111 | 6 | 108 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 73.6842 | 63.6364 | 87.5000 | 86.2069 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 73.6842 | 63.6364 | 87.5000 | 86.2069 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e0 | het | 98.1058 | 98.2984 | 97.9140 | 86.2050 | 751 | 13 | 751 | 16 | 3 | 18.7500 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.2770 | 99.0654 | 93.6413 | 86.2049 | 1802 | 17 | 1561 | 106 | 70 | 66.0377 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.2770 | 99.0654 | 93.6413 | 86.2049 | 1802 | 17 | 1561 | 106 | 70 | 66.0377 | |
| hfeng-pmm2 | INDEL | * | map_l100_m2_e1 | het | 98.0684 | 98.4635 | 97.6764 | 86.2047 | 2307 | 36 | 2312 | 55 | 7 | 12.7273 | |
| ckim-dragen | INDEL | * | map_siren | hetalt | 96.2185 | 92.7126 | 100.0000 | 86.2007 | 229 | 18 | 231 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 43.5514 | 40.6847 | 46.8526 | 86.1967 | 511 | 745 | 588 | 667 | 17 | 2.5487 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | hetalt | 94.8678 | 90.9091 | 99.1870 | 86.1953 | 120 | 12 | 122 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 89.8936 | 85.5422 | 94.7115 | 86.1932 | 781 | 132 | 788 | 44 | 4 | 9.0909 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | het | 53.8462 | 46.6667 | 63.6364 | 86.1925 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.0374 | 100.0000 | 78.6311 | 86.1918 | 469 | 0 | 471 | 128 | 75 | 58.5938 | |
| jli-custom | SNP | tv | map_l250_m2_e1 | * | 98.1308 | 97.2222 | 99.0566 | 86.1913 | 2835 | 81 | 2835 | 27 | 12 | 44.4444 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0494 | 98.1771 | 97.9221 | 86.1908 | 377 | 7 | 377 | 8 | 2 | 25.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e0 | het | 94.5055 | 95.8599 | 93.1889 | 86.1907 | 1204 | 52 | 1204 | 88 | 61 | 69.3182 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | * | 96.9560 | 97.3229 | 96.5919 | 86.1888 | 3490 | 96 | 3486 | 123 | 19 | 15.4472 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.2021 | 88.9542 | 95.6962 | 86.1888 | 757 | 94 | 756 | 34 | 14 | 41.1765 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | * | 95.0570 | 94.6970 | 95.4198 | 86.1887 | 250 | 14 | 250 | 12 | 6 | 50.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.6564 | 99.2278 | 98.0916 | 86.1887 | 514 | 4 | 514 | 10 | 4 | 40.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.6137 | 98.0460 | 99.1879 | 86.1881 | 853 | 17 | 855 | 7 | 2 | 28.5714 | |
| jlack-gatk | SNP | tv | map_l150_m1_e0 | het | 91.9297 | 98.8339 | 85.9271 | 86.1869 | 6865 | 81 | 6863 | 1124 | 59 | 5.2491 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5340 | 96.1089 | 99.0020 | 86.1869 | 494 | 20 | 496 | 5 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | homalt | 93.7500 | 90.0000 | 97.8261 | 86.1862 | 45 | 5 | 45 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_siren | het | 39.1268 | 27.9720 | 65.0794 | 86.1842 | 40 | 103 | 41 | 22 | 21 | 95.4545 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e1 | homalt | 99.3768 | 98.9842 | 99.7725 | 86.1825 | 1754 | 18 | 1754 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.1789 | 17 | 2 | 17 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 26.0012 | 16.8539 | 56.8627 | 86.1789 | 30 | 148 | 29 | 22 | 16 | 72.7273 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 86.1789 | 15 | 10 | 17 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 86.1789 | 18 | 1 | 17 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | * | 97.8332 | 96.3733 | 99.3380 | 86.1787 | 2551 | 96 | 2551 | 17 | 10 | 58.8235 | |
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | * | 75.1104 | 60.3648 | 99.3885 | 86.1772 | 17708 | 11627 | 17715 | 109 | 33 | 30.2752 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m1_e0 | het | 96.7742 | 93.7500 | 100.0000 | 86.1751 | 60 | 4 | 60 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.6667 | 86.1751 | 0 | 0 | 15 | 75 | 11 | 14.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | * | 67.3310 | 58.9041 | 78.5714 | 86.1728 | 43 | 30 | 44 | 12 | 8 | 66.6667 | |
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | homalt | 42.2477 | 26.7811 | 100.0000 | 86.1726 | 1030 | 2816 | 1030 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m1_e0 | het | 88.8889 | 85.7143 | 92.3077 | 86.1702 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 30.4348 | 21.2121 | 53.8462 | 86.1702 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | * | 96.7902 | 97.0968 | 96.4856 | 86.1688 | 301 | 9 | 302 | 11 | 1 | 9.0909 | |
| bgallagher-sentieon | SNP | * | map_l250_m2_e0 | homalt | 99.3276 | 98.9948 | 99.6627 | 86.1668 | 2659 | 27 | 2659 | 9 | 7 | 77.7778 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 86.1635 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 86.1635 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.1014 | 94.3662 | 100.0000 | 86.1635 | 67 | 4 | 66 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.6395 | 97.9730 | 99.3151 | 86.1611 | 145 | 3 | 145 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 92.7536 | 86.4865 | 100.0000 | 86.1607 | 32 | 5 | 31 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.5121 | 98.4899 | 87.2184 | 86.1606 | 4174 | 64 | 3910 | 573 | 37 | 6.4572 | |
| anovak-vg | SNP | tv | map_l150_m0_e0 | * | 77.9452 | 82.2472 | 74.0709 | 86.1595 | 3433 | 741 | 3428 | 1200 | 357 | 29.7500 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 86.1592 | 40 | 4 | 40 | 0 | 0 | ||