PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32701-32750 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 27.4286 | 19.3548 | 47.0588 | 86.4000 | 12 | 50 | 8 | 9 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.4138 | 15.8537 | 38.2353 | 86.4000 | 13 | 69 | 13 | 21 | 13 | 61.9048 | |
| jlack-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.7734 | 98.8372 | 98.7097 | 86.3987 | 765 | 9 | 765 | 10 | 5 | 50.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | het | 96.4143 | 96.0317 | 96.8000 | 86.3983 | 121 | 5 | 121 | 4 | 1 | 25.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | HG002compoundhet | het | 94.0512 | 98.4706 | 90.0115 | 86.3970 | 837 | 13 | 784 | 87 | 85 | 97.7011 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.1736 | 98.9011 | 99.4475 | 86.3961 | 360 | 4 | 360 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 98.7630 | 98.3951 | 99.1337 | 86.3950 | 797 | 13 | 801 | 7 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.3924 | 40 | 2 | 40 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.3924 | 40 | 2 | 40 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.1914 | 98.9247 | 99.4595 | 86.3921 | 368 | 4 | 368 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | homalt | 99.4705 | 99.1474 | 99.7957 | 86.3912 | 2442 | 21 | 2442 | 5 | 5 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.5425 | 92.0000 | 89.1304 | 86.3905 | 46 | 4 | 41 | 5 | 2 | 40.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 69.5757 | 72.8395 | 66.5919 | 86.3900 | 590 | 220 | 594 | 298 | 258 | 86.5772 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | het | 97.6831 | 97.6779 | 97.6883 | 86.3886 | 1304 | 31 | 1310 | 31 | 10 | 32.2581 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.7799 | 90.7407 | 97.0297 | 86.3881 | 98 | 10 | 98 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 47.1513 | 38.8350 | 60.0000 | 86.3874 | 80 | 126 | 78 | 52 | 50 | 96.1538 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | het | 89.3559 | 81.3580 | 99.0977 | 86.3869 | 659 | 151 | 659 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2379 | 97.0149 | 97.4619 | 86.3856 | 195 | 6 | 192 | 5 | 1 | 20.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 69.5601 | 72.7617 | 66.6284 | 86.3856 | 577 | 216 | 581 | 291 | 251 | 86.2543 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | homalt | 58.5484 | 41.3911 | 100.0000 | 86.3852 | 1690 | 2393 | 1690 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.5484 | 87.8788 | 100.0000 | 86.3850 | 29 | 4 | 29 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | het | 97.1755 | 95.2994 | 99.1269 | 86.3845 | 1703 | 84 | 1703 | 15 | 8 | 53.3333 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | homalt | 99.5006 | 99.1910 | 99.8121 | 86.3830 | 1594 | 13 | 1594 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | * | 78.2134 | 65.0032 | 98.1625 | 86.3822 | 1016 | 547 | 1015 | 19 | 7 | 36.8421 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 94.5312 | 99.1803 | 90.2985 | 86.3821 | 121 | 1 | 121 | 13 | 11 | 84.6154 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.4178 | 97.8346 | 99.0079 | 86.3821 | 497 | 11 | 499 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | hetalt | 94.0171 | 88.7097 | 100.0000 | 86.3804 | 110 | 14 | 111 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1840 | 99.0942 | 99.2740 | 86.3749 | 1094 | 10 | 1094 | 8 | 8 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | het | 94.0171 | 90.1639 | 98.2143 | 86.3747 | 55 | 6 | 55 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | het | 97.5202 | 96.2887 | 98.7837 | 86.3722 | 1868 | 72 | 1868 | 23 | 8 | 34.7826 | |
| jpowers-varprowl | SNP | * | map_l150_m0_e0 | het | 94.6235 | 94.6474 | 94.5997 | 86.3683 | 7515 | 425 | 7515 | 429 | 135 | 31.4685 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | * | 98.0268 | 97.0787 | 98.9936 | 86.3673 | 2160 | 65 | 2164 | 22 | 4 | 18.1818 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 60.2985 | 43.5345 | 98.0583 | 86.3666 | 202 | 262 | 202 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 98.9102 | 98.2283 | 99.6016 | 86.3661 | 499 | 9 | 500 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 89.4737 | 85.0000 | 94.4444 | 86.3636 | 17 | 3 | 17 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 66.6667 | 86.3636 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 66.6667 | 86.3636 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 66.6667 | 86.3636 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 86.3636 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 94.1176 | 100.0000 | 88.8889 | 86.3636 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.8750 | 96.8750 | 96.8750 | 86.3636 | 372 | 12 | 372 | 12 | 4 | 33.3333 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.3636 | 18 | 1 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.7587 | 96.7213 | 90.9722 | 86.3636 | 118 | 4 | 131 | 13 | 10 | 76.9231 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | * | 37.5000 | 23.0769 | 100.0000 | 86.3636 | 6 | 20 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.1429 | 4.0000 | 33.3333 | 86.3636 | 1 | 24 | 1 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 57.1429 | 50.0000 | 66.6667 | 86.3636 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.1429 | 4.0000 | 33.3333 | 86.3636 | 1 | 24 | 1 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 71.6418 | 60.0000 | 88.8889 | 86.3636 | 9 | 6 | 8 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.3636 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.8571 | 100.0000 | 86.6667 | 86.3636 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |